Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00553 ATGGCCGTAGTTACTTCAGCTCCTGGGAAAGTATTATTGACAGGAGGATACCTGATTTTGGAGAGGCCAAATCCTGGTTTGGTACTCAGTACAAATGCTCGTTTTTATGCAATTGTGAAACCACTGCACGAGCAAACTGAGGCAGAAAGTGGGAGTGGGGAATGGGTAGATGTGAAACTGACCTCACCACAGCTTTCTCGAGAAAGTCTATACAAATTATCGCTTAAGAGATTTACCATTCAGTGCATCGGCTTGAGTGAGTCAAAGAACCTTTTCGTAGAACATGCCTTGCAATATTCGTTGGCTGTTGCACATGGGATACTTGACAAGAACAAGAAAGATTCACTTCACAGGTTGCTACTACAAGGTCTCGATATCACAATTTTAGGATGCAATGATTTCTACTCTTATCGGAATCAGATTGAAGCACGTGGACTTCCATTGACACCAGAATCCTTGTTGTCTTTTACACCGTTTGCATCAATTACTTTCAATGCTGAAGAATCAAGTAGTGAAAATTGCAAGCCTGAAGTTGCGAAGACAGGATTGGGATCATCTGCTGCAATGACGACTGCTGTTGTTGCTGCCCTACTTAATTATCTTGGAGTTGTAAATCTTTCCTCATCAAGAGGTCAAGACAAAGAAAATGATATTAAGGATCTTGATATCGTGCATGTAATAGCCCAAACTGCTCACTGCATTGCACAGGGAAAAGTTGGAAGTGGATTTGATGTCAGTTCGGCAGTCTATGGCAGCCAACGTTATGTTCGTTTCTCACCCGACGTGCTTACCACTGCTCAGGCAGCAGTTAAAGAACCACTAGAAGAGGTCATTGTCGATATCTTAAAAGGAAAGTGGGACCACGAAAGGACTGAGTTTTCCTTGCCTCCACTAATGAATCTTTTATTAGGGGAACCAGGAGCAGGAGGATCATCCACACCATCGATGGTAGGTGCTGTTAAAAAGTGGCAAAAATCTGACCCTCAGAAATCTCAAGAAACATGGAATAAGTTGTCAGAAGCAAATCTCGATCTCGAGAGGCAACTAAATTTACTAAGAAAAGTTGCAGCAGAACAATGGGATGTGTATAAATGCATCTTAAGCAAATGCAGCATGCTTGGATCAAAAAAGTGGATGGAACAAGCTACTGAACCAAACCAACAAGCCATTGTTAAAGCGCTGTTAGGGGCAAGAGATGCCATGCTCGAAATACGAAATCATATGCGGCAAATGGGCGAAGCTGCAGGCATTCCAATTGAACCAAAGTCACAAACTGAGCTATTGGATAGAACAATGGAATTGGAAGGAGTTTTGGTGGCTGGAGTTCCAGGGGCAGGTGGGTTTGATGCTGTTTTTGCTATTACATTAGGTGATTCTAGCAGCCATGTGATTAAGTCATGGACTTCACTCAATGTTCTTGCCCTCTTGGTTAGAGAAGATCCCAATGGAGTTGCTCTAGAACGTGGTGATCCTAGAAGTAAGTGTATGGCACCTTCTGTTTAA 1503 42.71 MAVVTSAPGKVLLTGGYLILERPNPGLVLSTNARFYAIVKPLHEQTEAESGSGEWVDVKLTSPQLSRESLYKLSLKRFTIQCIGLSESKNLFVEHALQYSLAVAHGILDKNKKDSLHRLLLQGLDITILGCNDFYSYRNQIEARGLPLTPESLLSFTPFASITFNAEESSSENCKPEVAKTGLGSSAAMTTAVVAALLNYLGVVNLSSSRGQDKENDIKDLDIVHVIAQTAHCIAQGKVGSGFDVSSAVYGSQRYVRFSPDVLTTAQAAVKEPLEEVIVDILKGKWDHERTEFSLPPLMNLLLGEPGAGGSSTPSMVGAVKKWQKSDPQKSQETWNKLSEANLDLERQLNLLRKVAAEQWDVYKCILSKCSMLGSKKWMEQATEPNQQAIVKALLGARDAMLEIRNHMRQMGEAAGIPIEPKSQTELLDRTMELEGVLVAGVPGAGGFDAVFAITLGDSSSHVIKSWTSLNVLALLVREDPNGVALERGDPRSKCMAPSV 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3138953 3144415 - Carg23410-RA Car06g00553 150289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00553 500 Coils Coil 338 358 - -
Car06g00553 500 Pfam GHMP kinases N terminal domain 174 252 IPR006204 GO:0005524
Car06g00553 500 Pfam GHMP kinases C terminal 401 465 IPR013750 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00553 K00938 E2.7.4.2, mvaK2; phosphomevalonate kinase [EC:2.7.4.2] - cit:102621350 739.184
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car19g00164 Car-Chr19:1490995 Car06g00553 Car-Chr6:3138953 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g749 . . . . . . . . Cmo06g00627 . . . . . . . . . . . . . . . Cla10g00123 Cam10g0123 Cec10g0132 Cco10g0132 Clacu10g0128 Cmu10g0975 Cre10g0385 Cone8ag0498 Cone12ag0497 . . Lsi07g01156 . Chy04g00132 . . . Bda07g00072 Bda09g00760 Bpe08g00803 Bpe11g00312 . . Sed02g0043 . Cmo19g00227 Cma06g00619 . Car06g00553 . . Cpe15g00185 Bhi05g00433 Tan07g2028 Cmetu04g1055 Lac11g2456 Hepe06g0983 . Lcy12g1980 Cla09g01084 Cam09g1138 Cec09g1145 Cco09g1163 . . Cre09g1101 . Csa03g04572 . Cme04g00155
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003438 2 1 2 0 2 1 2 2 2 1 1 2 2 1 1 2 2 2 2 2 1 2 2 2 2 1 2 1 2 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00553 Car_Chr06 FPKM 0.801802 2.468178 0.0 0.0 0.0 0.0 0.0 0.0 0.137355 0.026716