Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00559 ATGAGTAGCAGTGAGATGGAGAAACCACCCAAAGACAAGGAGACCAAGACACCGCCGCTTACCACCCAGGAGCAGACTTCAACCACTAGCGCTGGCGCAGTTAATCCTGATTGGTCGGGATTTCAGGCATATTCTCCGATGCCTCCGCATGGTTACTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGAGTTCAGCATGTTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTACCCCCCTGGTGGCATATATGCTCATCCTTCCATTCCTCCGGGATCGTATCCTTTTAGCCCATTTGCAATGCCCTCTCCAAATGGCATCACTGAGGCCTCTGGTAATACAGCTGGCAGCTTAGATGGGGAGGGTAAGCCACCTGAAGTGAAGGAAAAGCTTCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACGGGGAAGAACAATGAGCTCGGTAAAACATCTGGAATATCTGCCAATGGAGCATACTCTAAAAGTGGTGAGAGTGCTAGCGAAGGTACAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCAAGACACTTTGGAAGGTGAAGCATCTCAGAACGGCAACTCCATGCATGGTGCTCAAAATGGAGGATCTAATACTCAGGCAATGACTGTCATTCCATTGGCTGCTGCTGGGGCCCCGGGAGTCATTCCTGGTCCCACGACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCATCCGCTATCCCTGCAATGCATGGAAAGGTTCCATCAACTCGAGTAGCTGGAGGATTAGTTGGATCTCGGGATAGTGTACAGTCACAGCTTTGGTTGCAGGATGAGAGAGAGCTTAAAAGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGGCGATCCCGGTTACGCAAGCAGGCAGAATGTGATGAACTAGGACACCGAGCTGAAGCCTTACAAGAAGAAAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGAATATGAACAATTACTTTCAGAGAATACTTCTCTGAAGGAACGACTCGGTGAAGTTACGGGAAACGAAGAAGTAAGGGCCAGCAGGAACGGCCAGCATTCGAGTAACGAAACCACACAACTTACAGAGTCGGAGGTTGTTCAAGTTGGTAACAAGAATTGA 1206 47.93 MSSSEMEKPPKDKETKTPPLTTQEQTSTTSAGAVNPDWSGFQAYSPMPPHGYLASSPQAHPYMWGVQHVMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFAMPSPNGITEASGNTAGSLDGEGKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTSGISANGAYSKSGESASEGTSEGSDANSQNESQPKLGSRQDTLEGEASQNGNSMHGAQNGGSNTQAMTVIPLAAAGAPGVIPGPTTNLNIGMDYWGASSAIPAMHGKVPSTRVAGGLVGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELGHRAEALQEENASLRSEVNRIRSEYEQLLSENTSLKERLGEVTGNEEVRASRNGQHSSNETTQLTESEVVQVGNKN 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3160924 3166098 + Carg23404-RA Car06g00559 150295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00559 401 Pfam bZIP transcription factor 295 357 IPR004827 GO:0003700|GO:0006355
Car06g00559 401 MobiDBLite consensus disorder prediction 1 42 - -
Car06g00559 401 MobiDBLite consensus disorder prediction 146 225 - -
Car06g00559 401 Coils Coil 315 363 - -
Car06g00559 401 MobiDBLite consensus disorder prediction 361 401 - -
Car06g00559 401 MobiDBLite consensus disorder prediction 1 18 - -
Car06g00559 401 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Car06g00559 401 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 297 360 IPR004827 GO:0003700|GO:0006355
Car06g00559 401 MobiDBLite consensus disorder prediction 373 401 - -
Car06g00559 401 MobiDBLite consensus disorder prediction 115 225 - -
Car06g00559 401 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 302 317 IPR004827 GO:0003700|GO:0006355
Car06g00559 401 Pfam Disordered region downstream of MFMR 135 261 - -
Car06g00559 401 MobiDBLite consensus disorder prediction 19 36 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g01399 Car06g00559 CCT
Car06g00559 Car16g01124 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00698 Car-Chr3:6103484 Car06g00559 Car-Chr6:3160924 1.45E-69 dispersed
Car06g00559 Car-Chr6:3160924 Car07g00439 Car-Chr7:2224683 1.12E-66 dispersed
Car16g01124 Car-Chr16:9650808 Car06g00559 Car-Chr6:3160924 0 wgd
Car02g01399 Car-Chr2:9195983 Car06g00559 Car-Chr6:3160924 6.05E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3678 PF16596 MFMR_assoc 1.30E-50 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00559 K09060 - csv:101206627 709.138