Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00560 ATGGGTTGCATGCTCTCTCATTTGGCCTCCAAATTCGCCTTCTTTCCGCCGTCGCCACCGACTTACCAGATCAGAAAGCGTGACGGGGACAGCGACGGCGACGCCCGCCTTACGGTGGTTCCGAAGGCGGCGGGAGCGCCGGTGGATGACAGTTTGCTGGATGTTTTGATGATCGATACTAAACGTGGGAATAAGATTGTGGGGTTTTATTTAAGGAATCCATGTGCGAGGCTTACTCTGCTTTATTCCCATGGCAATGCGGCGGACCTCGGCCAGCTTTATGATCTCTTCCTTCAGCTTAAAGTTAATCTCCGAGTTAATCTCATGGGATATGACTACTCTGGCTATGGAGCTTCAACTGGTAAGCCTAGCGAATTGAATACGTACGCTGACATCGAAGCGGTTTACGAGTGCCTTGAAACTGAGTATGGAGTGAGCCAAGAAGACTTGATCTTGTATGGGCAGTCTGTTGGAAGTGGACCAACATTGCATTTGGCTTCTAAGTTGCCAAGGCTAAGGGGCGTCGTCCTGCATAGTGCAATTCTTTCCGGTTTACGCGTTCTATGCCATGTGAAATTCTCCTTTTGCTTCGACATTTATAAGAACATCAACAAAATCAAGAAGGTGAAGTGCCCTGTGCTTGTGATACATGGCACAGAAGATGATGTTGTGAACTGGCTCCATGGAAATGGATTATGGAAAAAATCAAGAGAACCATATGATCCTCTATGGATAAAAGGAGGAGGGCACTGCAACTTAGAGCTTTATCCAGACTACATCCGCCATCTTTGCAAATTCATCCAAGAAATGGAGAACATGACGACGAAGATTCGCCTCAAAAGGATTCGACAGACGCTCGAGCTACAAACAAGATCCTGTTGCTGTTCGGGTTCTTGTGATGGATGCTGCAGCAGACTGAAATGCTGTCAGCCAAAATGTCCGAGACCAAGCTGCACAAGTTGCTGCTCGATACGCTTGAAGTGCCCCAAATGCCCCACATGCCCGAAGTGCTCGACACCCGGATGCTGCTTCGGCTGCCCCTCCATCTCCAGCTGCTTTGCTTGGAAGTGCTGCAACTGCACCAGTTGTTTTCAATGGAGATGCAGCAATTGCTGCAGCAGCTGTTTCCAATGGAGGTGCTGTTGTGGAAGAGGTTCGTCCAATGGGTAA 1170 48.8 MGCMLSHLASKFAFFPPSPPTYQIRKRDGDSDGDARLTVVPKAAGAPVDDSLLDVLMIDTKRGNKIVGFYLRNPCARLTLLYSHGNAADLGQLYDLFLQLKVNLRVNLMGYDYSGYGASTGKPSELNTYADIEAVYECLETEYGVSQEDLILYGQSVGSGPTLHLASKLPRLRGVVLHSAILSGLRVLCHVKFSFCFDIYKNINKIKKVKCPVLVIHGTEDDVVNWLHGNGLWKKSREPYDPLWIKGGGHCNLELYPDYIRHLCKFIQEMENMTTKIRLKRIRQTLELQTRSCCCSGSCDGCCSRLKCCQPKCPRPSCTSCCSIRLKCPKCPTCPKCSTPGCCFGCPSISSCFAWKCCNCTSCFQWRCSNCCSSCFQWRCCCGRGSSNG 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3166470 3169913 - Carg23403-RA Car06g00560 150296

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00560 K01076 ABHD17; abhydrolase domain-containing protein 17 [EC:3.1.2.22] - csv:101206393 662.144
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00560 Car16g01123 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00560 Car-Chr6:3166470 Car02g00842 Car-Chr2:6076645 2.16E-124 dispersed
Car16g01123 Car-Chr16:9645823 Car06g00560 Car-Chr6:3166470 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g732 . . Bda06g01255 . . Bpe07g00237 . . Cmo06g00634 Cmo16g01239 . . . . . Cpe14g00988 . . . . . . . . Cla10g00125 Cam10g0125 Cec10g0135 Cco10g0135 Clacu10g0130 Cmu10g0977 Cre10g0388 . Cone12ag0559 . . Lsi07g01160 . . Cme06g02440 . . . . . . . Bma12g00238 . . . Cma06g00625 Cma16g01191 Car06g00560 Car16g01123 . . . . . . . . . . . . . . . . . Csa03g00132 Chy06g02174 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007771 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00560 Car_Chr06 FPKM 99.925034 97.006142 95.21833 89.073624 110.842033 132.970856 107.812256 103.468086 105.696289 98.980072