Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00561 ATGGCGAGATCCACCAGCAAAGATGCTCAAGCTCTTTTCCAATCGCTTCTTTCAGCTTATGCTGCCACTCCAACAACCCTCAAGATCATTGATCTCTATGTGATGTATGCTGTGTTCACGGCTCTGATCCAGGTAGCTTACATGGCGATTATAGGTTCATTTCCATTCAACTCCTTCCTCTCCGGCGTACTTTCTTGTATTGGGACAGCTGTCCTTGCTGTATGTCTCCGGATTCAAGTTAATAAAGAAAATAAGGAATTCAAGGATTTGGCTCCGGAGCGAGCTTTTGCAGATTTCGTTCTTTGCAACCTGGTTCTCCATTTGGTAATTATCAACTTCCTTGGATAA 348 43.68 MARSTSKDAQALFQSLLSAYAATPTTLKIIDLYVMYAVFTALIQVAYMAIIGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIINFLG 115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3181653 3184937 - Carg23402-RA Car06g00561 150297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00561 115 Pfam DAD family 11 115 IPR003038 GO:0008250|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00561 K12668 OST2, DAD1; oligosaccharyltransferase complex subunit epsilon - csv:101204006 219.935
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00561 Car16g01122 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g01122 Car-Chr16:9641748 Car06g00561 Car-Chr6:3181653 9.45E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g729 . . . . . . . . Cmo06g00635 Cmo16g01238 . . . . . Cpe14g00986 . . . . . . . . Cla10g00126 Cam10g0126 . . Clacu10g0131 Cmu10g0978 . Cone8ag0492 Cone12ag0490 . . Lsi07g01161 . . . Blo03g00884 . Bda07g00074 . . Bpe11g00314 . . . . . Cma06g00626 Cma16g01190 Car06g00561 Car16g01122 . . . . . . . . . . . . . . . . . Csa03g00134 Chy06g02173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009636 1 2 1 1 1 1 2 0 0 1 1 1 2 0 1 2 1 2 2 0 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00561 Car_Chr06 FPKM 210.44487 212.845123 115.723267 108.723785 213.766907 251.869186 206.992096 159.514526 169.551636 149.344513