Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00565 ATGCCTTCTCAAAACCCTTTAGATTTGGTCTCTTGGAACAATAAATTGCCTTCTACTAACCCTTCTTCTTCTTCTTCTTCTAATTTTGACCCTTCTCCTCTTCTGTCTAACCCTAATTCCTCTTCCGATTTCCTCCACCGCCATTTCCCCACCGCTACCGCTGCGAATGGTGGCGGCGCTGGAACTGGTGGCCTCTTCCACCGCCATCTCCATGATCTTCACCATCAAGGGCTTGGATTCTTGAGACCCATTAGGGGAATTCCGGTTTATCAAAACTCTCCTTCTTCTTCCTCTTCCTCGTCCTTTTCGTACCCGATATTTGGTGGCGGTGGTAACGGTGGCGGTGGCGGTCAGTTTAATTATAACGCCGCCCATCGGTCAAGGTTCTTGGGGAGGTTTCCGACTAAACGGAATGTCCGAGCGCCGAGAATGCGGTGGACCACCACTCTACATGCTCGTTTTGTTCATGCTGTTAAGCTTTTGGGTGGCCATGAAAGAGCAACACCAAAATCAGTTCTTGAGCTTATGGATGTCAAAGATCTCACCTTGGCTCATGTCAAGTCCCATTTGCAGATGTATAGAACTGTGAAGACCACTGACAGAGCGGCTTCTTCTGGGAATTCTGATGTTTACGATCAAAATGGGCCATCTGGAGATACGACAAATGAAGACATAACGTATGAAAACGAGAAGTCGTCGAGAATTAGGTCGAGTGTTCCAACTACTGATGATGAGCATGGATATCGACAAACCGCTGGAGACGAACAAGATCATCACCATCATCATCCTCATAAGGACTTCTATTCTCTATGGAGCAATTCTTCGAGAGAAGCTTTGCTCCAAGGCACAAAAAATCATTCCTTTGAAAACCAACCCTCTCAGCATGATCAGAGTTATTTGGAACCGAAATGTTCGAGCCACGAAAGAACATCAGATGGAAGCTCATTGACAAATCTTTCAGCTGGAACAAGTCCCGAAAAGCCAAATTTGGAGTTCACGTTAGGACGATCGATTTGA 1017 46.21 MPSQNPLDLVSWNNKLPSTNPSSSSSSNFDPSPLLSNPNSSSDFLHRHFPTATAANGGGAGTGGLFHRHLHDLHHQGLGFLRPIRGIPVYQNSPSSSSSSSFSYPIFGGGGNGGGGGQFNYNAAHRSRFLGRFPTKRNVRAPRMRWTTTLHARFVHAVKLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAASSGNSDVYDQNGPSGDTTNEDITYENEKSSRIRSSVPTTDDEHGYRQTAGDEQDHHHHHPHKDFYSLWSNSSREALLQGTKNHSFENQPSQHDQSYLEPKCSSHERTSDGSSLTNLSAGTSPEKPNLEFTLGRSI 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3216703 3220046 - Carg23398-RA Car06g00565 150301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00565 338 MobiDBLite consensus disorder prediction 1 56 - -
Car06g00565 338 Pfam Myb-like DNA-binding domain 143 194 IPR001005 -
Car06g00565 338 MobiDBLite consensus disorder prediction 286 300 - -
Car06g00565 338 MobiDBLite consensus disorder prediction 286 338 - -
Car06g00565 338 MobiDBLite consensus disorder prediction 1 47 - -
Car06g00565 338 MobiDBLite consensus disorder prediction 199 223 - -
Car06g00565 338 MobiDBLite consensus disorder prediction 309 327 - -
Car06g00565 338 MobiDBLite consensus disorder prediction 224 267 - -
Car06g00565 338 MobiDBLite consensus disorder prediction 199 267 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00565 - - - csv:101204405 402.134
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g01391 Car06g00565 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02204 Car-Chr4:17917184 Car06g00565 Car-Chr6:3216703 9.93E-31 dispersed
Car06g00565 Car-Chr6:3216703 Car13g00809 Car-Chr13:8878771 5.93E-39 dispersed
Car16g01117 Car-Chr16:9609693 Car06g00565 Car-Chr6:3216703 5.16E-124 wgd
Car19g00172 Car-Chr19:1554049 Car06g00565 Car-Chr6:3216703 2.40E-74 wgd
Car02g01391 Car-Chr2:9146192 Car06g00565 Car-Chr6:3216703 3.85E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g717 . . . . . . . . Cmo06g00638 . Cma02g01632 . Car02g01391 . . . . . . . . . . . Cla10g00132 Cam10g0130 Cec10g0139 Cco10g0139 Clacu10g0135 Cmu10g0982 Cre10g0392 . . . . . . Chy04g00122 . . Blo19g00245 . . . . . . . Cmo02g01676 Cmo19g00231 Cma06g00631 . Car06g00565 . . Cpe15g00191 . . . . . . . . . . . . . . . . . Cme04g00145
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3679 PF00249 Myb_DNA-binding 1.20E-05 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00565 Car_Chr06 FPKM 0.0 0.0 0.0 0.183934 0.669364 1.415504 0.978174 0.118618 0.0 0.0