Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00566 ATGAATTGTGAAGCTACCAACAAAACCGCAGCTGTCAAGAAAATGATGAATAGAAGTGGAGGTGATGCTTTAAGGGCTTCAGCTCCATGTGGTGTGAGATTACTTGGTGGCAATTCAGAAACTTTTTCTCGTTCAAGTGGCATGTCAAATGAGAGGGATGTCTTTTCGAAAAGGAGAGTAGATAAGTTTGAATACGATGATTTAGAGTGGACCGAGAAGATTCCAGAATGCCCTGTATATTCTCCGTCAAAGAAGGAGTTTGAGGATCCTTTGATCTATTTGCAAAAGATAGCTCCAGAAGCCTCAAAATATGGCATATGCAAGATTGTCTCGCCACTGGCTGCTTCTGTTCCTGCCGGGGCTGTATTAATGAAGGAGAAACCAGGGTTCAGGTTTACAACGAGAGTACAACCTTTTCGCTTTGCTGAATGGAATACTGATGATCAGGTTACCTTCTACATGAGTGGCAGGAACTATACATTTCGCGATTTTGAAAAAATTGCGAACAAGATATATGCTCGTAGATATAGTAGTTCTGGATGTCTACCTGCCTCATATTTGGAAAAGGAATTTTGGCGTGAAATTGCTAGTGGGAAGACAGAAAGTGTTGAATATGCTTGCGATGTTGATGGTAGTGCCTTTTCATCTTCTCCAACTGATGAGCTTGGGACAAGTAAATGGAATTTAAAGAATCTTTCACGGTTACCCAAGTCCATATTGCGCCTTCTGGAAACTCCAATACCGGGAGTCACGGACCCCATGCTTTATATTGGAATGCTGTTCAGTATGTTTGCTTGGCATGTGGAAGATCATTATCTATACAGTATTAATTATCATCATTGTGGGGCATCTAAAACTTGGTATGGCATTCCTGGTCAAGCAGCTTTGCAGTTTGAAAATGTGGTCAGGGAGCATGTATACACCAGCGATATCTTATCCACTCGTGGAGAGGATGGAGCATTTGATGTTCTTCTGGGGAAAACAACGTTGTTTCCACCAAATATTTTGTTGGATCATGAGGTGCCTGTATACAGAGCTGTCCAGCAACCTGGGGAGTATGTAATTACCTTCCCCAGAGCATATCATGCTGGATTCAGTCATGGCTTCAATTGTGGTGAAGCAGTAAACTTTGCAATGGGTGATTGGTTCCCTTTGGGAGCTGTTGCCAGCCAGCGGTATGCTCTTCTAAACAGGATGCCTCTAATTCCTCATGAAGAGCTTCTATGTAAAGAAGCAATGCTTCTCTACACAAATTCAGAATTTGAAGACCAACATTATGCGTCTGTAGAGTTAGACTCTCATTATTCTGTTAAGACTTCTTTTGTACGTATGATTCGCTTCCAGCATCATGCTCGATGGGCTTTGATGAAATCGAGAACGTGCACTGGCATTTCACCAAATTGCCATGGAACCATCCTTTGCAGCTTATGCAAACGTGACTGCTATATATCATATATTAACTGCAGTTGTTCTGGACATCCAGTGTGTCTTCGTCATGATATCAAATCTCTGAACTTCTCATGTGGTAGCAACCGGACACTCTTCTTGTGTGAGGATATTTTAGAAATGGAATCTGCAGCTCAAAAATTTGAGCAGGAATATGGAACATTGGATGAGATTCATGGACAAACTTATAATGATGAAGAATTATATTCTTATCCTATGTTAAATTCATTTAAACGAGCTGATGTGGATGGATACGCTCCTTATTGCAAGATAGAAGTGCAGTTGAATTCTGAATTTACTACTGCTGCTGCTTCTCTTTGTCGCTTGGGAGAAAATGAGGGTGTTTCCTGTAGCCAACCTACTCTAAGTTGTATCACCGAAAACCATAGACCTGAACCATCAGATCCTTCTCTCTCTTGTGAAGCATCAACTCTTTGTTCAGTTGTAGACTACAATGAATCATTGTCCACAACTAGCCATGTAAGATCTGATTTCGAGCTCAACTTATCCATTTTTCTAAATCATAGTTTACATCACAGTGAGTTCTTGTTTAGAATAGCATGTTATGAAGTACAAAGAAATGCAAGTTTTGAGCAGTCCTCAGAAATTTCTGTCTGTGCACTTGAATCATCGCCTAACAATTGCTCGAGTACATCTCCGGGCAATATACGTGCATTGGAGATCACCACAGTATTAGAACAAGAAAGTGATGATTCTGATGCAGAAATTTTTAGGGTTAAGCGTCGCCCTCTGAAGCTAAATAAAAAGACAGGGAGCGATGCCACATCTTTAAAGCATTTTGCTGGCCAGGATGGCCGCAAAAGATTGAAGAGACTCCAAACAAATGGGAATTCTGAGCAACTAACGCCAAGGGATTATCGTGGAACTGACAAATCACGTTGTAAATTCTACCCTACTTATAAAGACTCTGCAAGTGATGCCATCGGTAAATCTAGCAAAGGGACCATTCCAATCTCTGCGAAGTACAAGAGATTCATCGACGAGAAACTAGTAAATAGACAGCGCGTCCATGAACTCGACAATCACAGGAGGGAAAGGTTTCAGCATGATATGATGAAAAAGCCCAAACGGCTACCTCCCTCTATGGAGATTGGGTCAAAGCGTCTCAAAATCAGAGGCCCAACATTCTTGGGGCCGGATGAACCAATAGTTTAA 2622 41.42 MNCEATNKTAAVKKMMNRSGGDALRASAPCGVRLLGGNSETFSRSSGMSNERDVFSKRRVDKFEYDDLEWTEKIPECPVYSPSKKEFEDPLIYLQKIAPEASKYGICKIVSPLAASVPAGAVLMKEKPGFRFTTRVQPFRFAEWNTDDQVTFYMSGRNYTFRDFEKIANKIYARRYSSSGCLPASYLEKEFWREIASGKTESVEYACDVDGSAFSSSPTDELGTSKWNLKNLSRLPKSILRLLETPIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGQAALQFENVVREHVYTSDILSTRGEDGAFDVLLGKTTLFPPNILLDHEVPVYRAVQQPGEYVITFPRAYHAGFSHGFNCGEAVNFAMGDWFPLGAVASQRYALLNRMPLIPHEELLCKEAMLLYTNSEFEDQHYASVELDSHYSVKTSFVRMIRFQHHARWALMKSRTCTGISPNCHGTILCSLCKRDCYISYINCSCSGHPVCLRHDIKSLNFSCGSNRTLFLCEDILEMESAAQKFEQEYGTLDEIHGQTYNDEELYSYPMLNSFKRADVDGYAPYCKIEVQLNSEFTTAAASLCRLGENEGVSCSQPTLSCITENHRPEPSDPSLSCEASTLCSVVDYNESLSTTSHVRSDFELNLSIFLNHSLHHSEFLFRIACYEVQRNASFEQSSEISVCALESSPNNCSSTSPGNIRALEITTVLEQESDDSDAEIFRVKRRPLKLNKKTGSDATSLKHFAGQDGRKRLKRLQTNGNSEQLTPRDYRGTDKSRCKFYPTYKDSASDAIGKSSKGTIPISAKYKRFIDEKLVNRQRVHELDNHRRERFQHDMMKKPKRLPPSMEIGSKRLKIRGPTFLGPDEPIV 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3227476 3233435 - Carg23397-RA Car06g00566 150302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00566 873 Pfam JmjC domain, hydroxylase 254 377 IPR003347 -
Car06g00566 873 Pfam C5HC2 zinc finger 474 525 IPR004198 -
Car06g00566 873 ProSiteProfiles JmjN domain profile. 77 118 IPR003349 -
Car06g00566 873 ProSiteProfiles JmjC domain profile. 224 394 IPR003347 -
Car06g00566 873 Pfam jmjN domain 78 110 IPR003349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00566 - - - csv:101211852 1426.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00566 Car15g01104 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00566 Car-Chr6:3227476 Car20g00799 Car-Chr20:4835301 1.14E-166 dispersed
Car13g00623 Car-Chr13:7924587 Car06g00566 Car-Chr6:3227476 1.45E-55 dispersed
Car16g01115 Car-Chr16:9594155 Car06g00566 Car-Chr6:3227476 0 wgd
Car19g00173 Car-Chr19:1572092 Car06g00566 Car-Chr6:3227476 0 wgd
Car02g01389 Car-Chr2:9129074 Car06g00566 Car-Chr6:3227476 2.63E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g327 . . . . . . . Bma14g00076 . . . Cma15g01224 . Car15g01104 . . . . . . . . . . . . . . . . . Cone8ag0485 Cone12ag0310 . . . Csa05g00286 Chy09g01220 . . . . . . . . . . . Cmo15g01289 Cma06g00632 . Car06g00566 . . Cpe13g00159 Bhi12g00252 . . . . . . . . . . . . . . . . Cme09g01757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001654 1 9 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 1 2 2 4 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3680 PF02373 JmjC 7.80E-39 CL0029 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00566 Car_Chr06 FPKM 11.923077 12.230763 16.695583 14.565747 14.915903 18.736032 14.418332 26.684874 20.68177 26.242844