Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00568 ATGTCGGTTAGGACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCATCTGAACGAGATATCATGGAGTTTTTTTCCTTTTCTGGTGACATTGAATATCTGGAAATGCAGAGTGAAAGTGAACGGTCTCAAATTGCTTATGTGACTTTTAAGGATGTTCAAGGTGCTGAGACTGCTGTTCTTCTGTCTGGAGCAACTATAGTGGATCTTTCTGTCAACATCACTCTGTGTCCTGAATATGAGCTCCCTCCAGAAGCTACCGCGGCACCACCTGCCCCAGGAGCTAAAGAACCTGGTGCTGCTGAATCCGCCTTTCGGAAAGCCGAGGATGTGGTTAGCGGCATGCTTGCCAAGGGCTTTATATTGGGTAAAGATGCAGTCAACTCCGCAAAGGCATTTGATGAGAAACATCAATTATCTTCCACGGCCTCAGCCAAAGTTGCTACATTTGATAAGAAAATTGGGTTCACTGAGAAAATTAGTGCTGGTACATCGTTGGTGAGCGACAAAGTTCGGGAAGTCGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAGGAAAAAGTTAGCACTGCTGGGTCTGCCATTATGAAAAACCGATACATATTGACCGGGACTAGCTGGGTTACTGGCGCTTTCAGTAAGGTAGCCAAGGCAGCTGGAGAGGTTGGTCAGAAAACAAAAGAGAAAGTCGAGGAGACGGAAGAAGAACAGAGAAAGAAGATGGTCGAAGATTTTGCTCAGGTTCATCTCTCGGAATCCCCTAAAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCATCTGCACCCCCTGAGCCTCAACAACGCCCCAAGCCCGAACCCGCTCAAGAACGAAATCTATTCACGTGA 894 47.43 MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVLLSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFILGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETEEEQRKKMVEDFAQVHLSESPKGGGGGGAAAAAAAASAPPEPQQRPKPEPAQERNLFT 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3248566 3252107 - Carg23395-RA Car06g00568 150304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00568 297 MobiDBLite consensus disorder prediction 226 297 - -
Car06g00568 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Car06g00568 297 MobiDBLite consensus disorder prediction 227 252 - -
Car06g00568 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 66 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00568 - - - cmos:111431529 440.654
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00568 Car14g00397 CST
Car06g00568 Car16g01110 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00568 Car-Chr6:3248566 Car20g00796 Car-Chr20:4809688 8.39E-92 dispersed
Car16g01110 Car-Chr16:9564824 Car06g00568 Car-Chr6:3248566 1.80E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g710 . . . . . . . . Cmo06g00642 Cmo16g01227 . . . . . Cpe14g00976 . Bhi11g00013 . . . . . . Cla10g00137 Cam10g0136 Cec10g0146 Cco10g0146 Clacu10g0140 Cmu10g0987 Cre10g0398 . Cone12ag0564 . . Lsi07g01175 . . Cme06g02453 Blo03g00876 . Bda07g00083 Bda09g00754 Bpe08g00810 Bpe11g00320 . . . . . Cma06g00637 Cma16g01177 Car06g00568 Car16g01110 . . . . . . . . . . . . . . . . . Csa03g00147 Chy06g02162 .
Vvi8g1245 . . . . . . . . Cmo06g00642 . . . . . . . Cpe08g01390 . . . . . . . . . . . . . . . . Cone13ag0544 . . . . Cme04g02223 . . . . Bpe04g00563 Bpe02g00010 . Bma04g00467 . . . Cma06g00637 . Car06g00568 Car14g00397 Cpe03g00383 . . . . . . . . Cla10g01654 Cam10g1701 Cec10g1754 Cco10g1719 Clacu10g1721 Cmu10g2474 Cre10g1852 Lsi03g01720 Csa03g03595 Chy04g01762 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001653 2 4 2 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00568 Car_Chr06 FPKM 30.49365 36.857296 45.930157 45.94363 24.020863 21.882048 24.315584 41.037319 43.702431 41.474506