Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00573 ATGGATTCTTCTCTGCGCAATTCTCTCAATCCCAATAAACTTCTCAAAGAAGAATTCGTTAGCAATTTGACTGGATCTTCTATGATCGAAATCGCGGCGCTTTCCACTATCATACCTATTCTGGTGATTCTTCGGCATTCATTCTACTCCAGCGGCGTGATTGATCATACCGCTGCAGATGCTTCACTTAAGAAAAGTGACAATCCAGTTATCCACTCAAAGAGCTTGAAGCGATACTTGGCTGCCATTACTGTAGATTTTCTTGTTATCGTGATTCCCACTATCTTATTTTTCACTGTAAGTAATGTTCTAGCAGAATGGTCATGTCTGTGTGCGTATATAAAATGTTGCATGAGCTGCTGCTGGGCAAACAAGTCTCTTCTGCATCACGCTGACAAAAAGCCATTGTACTCCCAACACAGAATCCACAGTCATTCTCCAACATGGGAAACAGCAAACCAAAGTCTAAAGGAAAATATTTCATCTTTTAGGGTTGTTGTGATGATCACAACATGCTTGTGCATATTGGCTGTTGACTTCAGAATATTTCCCAGAAGATATGCTAAAACAGAGACTTATGGTACAAGTCTGATGGATCTTGGTGTCGGTTCATTTGTGCTGGCAAATTCATTAGTTTCTCAGCAGGCACGAAATGTCCCATCCACAAAGCGAAAAGGTGCATTAAAATCTGTTTTTCCTCTTATCGTTCTTGGACTAGTTCGTCTTATTACTACTTCTGGTGTAGATTATCAGGTTCATGTGGGAGAATATGGAGTGCACTGGAATTTCTTTTTCACACTTGCTGGTGTATCAATTCTTACCACTGTCATTAATATTCCTCCACAATATTCTGGAATTATTGGTACAACAATTCTAGTAGGGTACCAGTGTTGGTTGACGTATGGGTTAAATACTTATCTTCTTTCAAATCAGAGGGGATCAGATATAATCAGTCAAAACAAGGAAGGAATTTTTAGCATATTTGGGTATTGGAGTATTTACCTTATTGGCGTGCAGTTGGGAAACTCTATCTTCTTTGGAAAAAATTCAACTGCTACGCTAAGGAGCAATAGAAGAGCAAGGATAATAGTTTGGATACTTGCTCTTTCCTTTTGGATGGCAACCTTGCTTCTGGATTCCCATGTTGAGAAAGTTTCTCGAAGAACGTGCAATCTAGCATACGTTAATCTGGTACTGGCACAAAATTTACAGGTTTTGGCAATATTAATGCTTTCTAGTTATGTTACTGGTAATGGAACTTCTGTTCTTGAAGAAGCGTTCAACAGCAATTTATTGGCTGCATTTCTTTTGGCAAACTTGCTCACTGGGTTAGTTAACTTGTCTGTCGATACCCTGTCCACGTCATCCATCTTCGCTTTATTTATTTTGCTTGCGTATGCATTTACTTTATCGACGCTAACGGGACTGGCCAAGTTCTATGGCATGAGGTTGAAGTTTTGGTAG 1464 39.55 MDSSLRNSLNPNKLLKEEFVSNLTGSSMIEIAALSTIIPILVILRHSFYSSGVIDHTAADASLKKSDNPVIHSKSLKRYLAAITVDFLVIVIPTILFFTVSNVLAEWSCLCAYIKCCMSCCWANKSLLHHADKKPLYSQHRIHSHSPTWETANQSLKENISSFRVVVMITTCLCILAVDFRIFPRRYAKTETYGTSLMDLGVGSFVLANSLVSQQARNVPSTKRKGALKSVFPLIVLGLVRLITTSGVDYQVHVGEYGVHWNFFFTLAGVSILTTVINIPPQYSGIIGTTILVGYQCWLTYGLNTYLLSNQRGSDIISQNKEGIFSIFGYWSIYLIGVQLGNSIFFGKNSTATLRSNRRARIIVWILALSFWMATLLLDSHVEKVSRRTCNLAYVNLVLAQNLQVLAILMLSSYVTGNGTSVLEEAFNSNLLAAFLLANLLTGLVNLSVDTLSTSSIFALFILLAYAFTLSTLTGLAKFYGMRLKFW 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3293588 3300623 - Carg23390-RA Car06g00573 150309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00573 487 Pfam GWT1 319 446 IPR009447 GO:0006506|GO:0016021|GO:0016746
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00573 K05283 PIGW; glucosaminylphosphatidylinositol acyltransferase [EC:2.3.-.-] - csv:101206318 714.531
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g681 Blo02g00988 . . Bda08g00633 Bpe05g00525 . . . Cmo06g00651 . . . . . . . . Bhi11g00025 . . . . . . Cla10g00147 Cam10g0143 Cec10g0152 Cco10g0152 Clacu10g0146 Cmu10g0993 Cre10g0404 . . . . Lsi07g01182 . . Cme06g02460 . . . . . . Bma05g00710 . . . . Cma06g00644 . Car06g00573 . . . . . . . . . . . . . . . . . . Csa03g00156 Chy06g02153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005151 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 4 4 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00573 Car_Chr06 FPKM 16.513605 21.851307 27.924637 22.588125 20.381695 20.759386 20.962029 36.170818 33.538486 37.775871