Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00576 ATGGCCATTCCTATATCAGCTAACATTTCATGCCAATCTGTTCTTCACCTCACTATCGGCCTTCCTACCGTCTTTCGTCACTCGATCATCTGGTGCGTCGATTTCGACCTAAAGGTGCGCTTTGCGACAACGCTTATACATTCGGTTATAAAGGATATTGCCCAGAAACAAGCTATGGAAGCTGACTACCATACCGCCACGACTCAGATTGGACCTTTGTCCTTGCCGAGTTCCGATGATATCACTCATTTTGAAGTGGTCCATTTGCCACACATTTTGAAGAGGCAAAAAGATTGGGAGACATCTGTAAGTGTGACAGATTTCGACTGGAAACAGATTGCCGAACCCGTTATGCAACTGTACACCGAGACGACGGATGGTTCTACAATCGAAACTAAAGAGAGCGTTCTTGTTTGGAACTACCTTTACGCGGATCCTGATTTCGGCTCGTGCCAGGCTAAGGAACTTTTAGATCACCTTGAAAGTGTTCTTGCTAATGAGCCAGTTTCTGTCAAGAGTGGCCAACACATTGTAGAAGTCAAACCTCAGGGTGTAAACAAGGGTATTGTAGCAGAATATCTCTTGCAAACAATGAGGGAGAAGGGAATGCTTCCCGATTTCGTTCTATGCATCGGAGACGATAGGTCGGACGAGGATATGTTCGAGGTGATAACGAGTGCAAAACCCACCCTTCCTCCCAATGCTGAAGTGTTCGGTTGCACGGTCGGGCAGAAACCGAGCAAGGCTAAGTATTACTTGGAAGACACACACGAAATCTTGAGAATGTTACAAGGTCTCACCCATGCGTCCGAGCATGCCGCTCGAGCCACCGCACAGACGACGCCTCATAGAGTGATTATTCTTTACGGCGACCCCGAGAGATGCGGCGGCGCGTATCTGAATGTTGTCCAATCCTCCATTCCGGCCGGCGGCTGCACGGAACTTTGCGCCAAAACTAACACCGTCTCTGTGATCCGAATATCTCCGGTCTGTGCGTTTGCGAACTTGATGGATTCAAGTATTGCTATTGGCATCGTAATTCTCAGTATCAGCTTGATTTTGAGTCGTGTCCTTTATGTTTTATATTGGAGTGGTAGACCCCTTCCAAACAAAAGCTTGGGATCTGTCAGTACCCTCATTGTCTTAGGCTCAGGGGGTCACACGGCCGAAATGCTCAATGTGTTGTCTGTGCTGCAGAAAGACTTGTTTTCTCCAAGATTCTACATTGCTGCTGCTGCTACCGATTACATGAGTCTTCAAAAAGCTCGCACATATGAACATCAACTGCCTCATAAGGTACGTTATCAGGGTCTTCAAACTTCTCTTATTTTTCTGAATAAGGAAACGAGGGAGGGGATAGTATGGCCTATGGATTCTCTGCAATGGCCATGGTACAATTGTATCCCATTATGCGCAATTGCATTCATATTCAAGGTTGTGGGGATTAGATGGTCATCAATTTTTTATGTGGAAAGCATTGCAAGAGTGAAGAGATCATCATTGAGTGGGTACATTTTATACAAGTTACACATGGCTGATCAGTTCTTTGTGCAATGGCCACAACTACACACAAAATATCCCCACGCTCACTACGTTGGTTGTCTCGTGTAG 1611 46.06 MAIPISANISCQSVLHLTIGLPTVFRHSIIWCVDFDLKVRFATTLIHSVIKDIAQKQAMEADYHTATTQIGPLSLPSSDDITHFEVVHLPHILKRQKDWETSVSVTDFDWKQIAEPVMQLYTETTDGSTIETKESVLVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEVKPQGVNKGIVAEYLLQTMREKGMLPDFVLCIGDDRSDEDMFEVITSAKPTLPPNAEVFGCTVGQKPSKAKYYLEDTHEILRMLQGLTHASEHAARATAQTTPHRVIILYGDPERCGGAYLNVVQSSIPAGGCTELCAKTNTVSVIRISPVCAFANLMDSSIAIGIVILSISLILSRVLYVLYWSGRPLPNKSLGSVSTLIVLGSGGHTAEMLNVLSVLQKDLFSPRFYIAAAATDYMSLQKARTYEHQLPHKVRYQGLQTSLIFLNKETREGIVWPMDSLQWPWYNCIPLCAIAFIFKVVGIRWSSIFYVESIARVKRSSLSGYILYKLHMADQFFVQWPQLHTKYPHAHYVGCLV 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3308313 3316395 - Carg23387-RA Car06g00576 150312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00576 536 Pfam Trehalose-phosphatase 95 256 IPR003337 GO:0003824|GO:0005992
Car06g00576 536 Pfam Oligosaccharide biosynthesis protein Alg14 like 466 535 IPR013969 GO:0006488
Car06g00576 536 Pfam Oligosaccharide biosynthesis protein Alg14 like 379 434 IPR013969 GO:0006488
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00576 K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] - csv:101207192 355.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00576 Car-Chr6:3308313 Car16g01106 Car-Chr16:9513585 9.31E-78 dispersed
Car06g00576 Car-Chr6:3308313 Car19g00792 Car-Chr19:8586811 8.72E-79 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car02g00661 . 49 481 Trehalose Biosynthesis Gene Families AT4G24040 55.6 2.5e-140 496.5
Car16g01107 . 1 962 Trehalose Biosynthesis Gene Families AT1G06410 58.5 0.0e+00 1103.2
Car10g00127 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.3 3.1e-303 1038.1
Car19g00792 . 1 242 Trehalose Biosynthesis Gene Families AT1G06410 78.5 2.4e-106 384.0
Car03g01201 . 1 245 Trehalose Biosynthesis Gene Families AT1G06410 72.2 5.0e-104 376.3
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT1G06410 64.9 1.5e-60 231.9
Car06g00576 . 97 271 Trehalose Biosynthesis Gene Families AT1G06410 66.7 1.3e-59 228.8
Car11g00104 CCT,CST,ECH 1 155 Trehalose Biosynthesis Gene Families AT1G06410 66.5 9.0e-53 206.1
Car01g01086 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 64.8 3.1e-242 835.1
Car18g00415 . 83 691 Trehalose Biosynthesis Gene Families AT1G16980 64.3 3.4e-241 831.6
Car10g00127 . 1 851 Trehalose Biosynthesis Gene Families AT1G23870 67.1 0.0e+00 1220.3
Car16g01107 . 1 961 Trehalose Biosynthesis Gene Families AT1G23870 54.9 3.8e-309 1057.7
Car03g01201 . 1 246 Trehalose Biosynthesis Gene Families AT1G23870 61.8 4.1e-85 313.5
Car19g00792 . 1 257 Trehalose Biosynthesis Gene Families AT1G23870 58.8 1.5e-82 305.1
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT1G23870 75.3 6.8e-72 269.6
Car06g00576 . 96 270 Trehalose Biosynthesis Gene Families AT1G23870 62.7 3.3e-58 224.2
Car11g00104 CCT,CST,ECH 1 156 Trehalose Biosynthesis Gene Families AT1G23870 69.2 3.6e-57 220.7
Car10g00127 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 66.7 0.0e+00 1211.4
Car16g01107 . 1 966 Trehalose Biosynthesis Gene Families AT1G60140 52.5 4.5e-302 1034.2
Car03g01201 . 1 250 Trehalose Biosynthesis Gene Families AT1G60140 60.0 1.7e-83 308.1
Car19g00792 . 1 246 Trehalose Biosynthesis Gene Families AT1G60140 60.2 3.2e-82 303.9
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT1G60140 71.3 1.7e-67 255.0
Car11g00104 CCT,CST,ECH 1 160 Trehalose Biosynthesis Gene Families AT1G60140 68.1 9.4e-58 222.6
Car06g00576 . 95 275 Trehalose Biosynthesis Gene Families AT1G60140 59.0 2.1e-57 221.5
Car16g01107 . 1 963 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1211.1
Car10g00127 . 1 837 Trehalose Biosynthesis Gene Families AT1G68020 61.7 0.0e+00 1081.6
Car19g00792 . 1 245 Trehalose Biosynthesis Gene Families AT1G68020 64.5 4.3e-87 320.1
Car03g01201 . 1 246 Trehalose Biosynthesis Gene Families AT1G68020 62.6 2.1e-86 317.8
Car06g00576 . 93 282 Trehalose Biosynthesis Gene Families AT1G68020 67.2 6.9e-69 259.6
Car04g01747 . 89 252 Trehalose Biosynthesis Gene Families AT1G68020 66.5 2.2e-59 228.0
Car11g00104 CCT,CST,ECH 1 155 Trehalose Biosynthesis Gene Families AT1G68020 67.1 2.8e-54 211.1
Car10g00127 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1106.3
Car16g01107 . 1 961 Trehalose Biosynthesis Gene Families AT1G70290 50.1 4.8e-269 924.5
Car03g01201 . 1 249 Trehalose Biosynthesis Gene Families AT1G70290 61.0 7.8e-86 315.8
Car19g00792 . 1 252 Trehalose Biosynthesis Gene Families AT1G70290 60.5 8.0e-83 305.8
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT1G70290 74.1 1.6e-70 265.0
Car06g00576 . 94 280 Trehalose Biosynthesis Gene Families AT1G70290 59.3 4.7e-59 226.9
Car11g00104 CCT,CST,ECH 1 156 Trehalose Biosynthesis Gene Families AT1G70290 68.6 9.9e-57 219.2
Car01g01086 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.0 0.0e+00 1464.9
Car18g00415 . 1 919 Trehalose Biosynthesis Gene Families AT1G78580 73.2 0.0e+00 1352.8
Car10g00127 . 27 839 Trehalose Biosynthesis Gene Families AT2G18700 59.5 2.3e-298 1021.9
Car16g01107 . 1 962 Trehalose Biosynthesis Gene Families AT2G18700 51.7 1.6e-283 972.6
Car03g01201 . 1 242 Trehalose Biosynthesis Gene Families AT2G18700 62.9 2.0e-79 294.7
Car19g00792 . 1 242 Trehalose Biosynthesis Gene Families AT2G18700 60.9 9.1e-77 285.8
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT2G18700 65.7 1.1e-58 225.7
Car06g00576 . 99 271 Trehalose Biosynthesis Gene Families AT2G18700 64.0 4.4e-55 213.8
Car11g00104 CCT,CST,ECH 1 157 Trehalose Biosynthesis Gene Families AT2G18700 63.9 1.0e-48 192.6
Car16g01107 . 1 957 Trehalose Biosynthesis Gene Families AT4G17770 69.2 0.0e+00 1320.1
Car10g00127 . 1 832 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1104.7
Car19g00792 . 5 250 Trehalose Biosynthesis Gene Families AT4G17770 59.3 2.9e-83 307.4
Car03g01201 . 5 238 Trehalose Biosynthesis Gene Families AT4G17770 62.0 1.4e-82 305.1
Car06g00576 . 98 266 Trehalose Biosynthesis Gene Families AT4G17770 78.4 2.5e-74 277.7
Car04g01747 . 88 263 Trehalose Biosynthesis Gene Families AT4G17770 62.5 1.3e-59 228.8
Car11g00104 CCT,CST,ECH 1 152 Trehalose Biosynthesis Gene Families AT4G17770 63.8 1.3e-51 202.2
Car01g01086 . 93 923 Trehalose Biosynthesis Gene Families AT4G27550 61.7 2.9e-300 1028.1
Car18g00415 . 87 913 Trehalose Biosynthesis Gene Families AT4G27550 60.3 1.6e-290 995.7
Car01g01086 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.0 0.0e+00 1464.9
Car18g00415 . 1 919 Trehalose Biosynthesis Gene Families AT1G78580 73.2 0.0e+00 1352.8
Car01g01086 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 64.8 3.1e-242 835.1
Car18g00415 . 83 691 Trehalose Biosynthesis Gene Families AT1G16980 64.3 3.4e-241 831.6
Car01g01086 . 93 621 Trehalose Biosynthesis Gene Families AT1G17000 62.2 8.5e-191 664.5
Car18g00415 . 78 606 Trehalose Biosynthesis Gene Families AT1G17000 60.3 1.4e-188 657.1
Car01g01086 . 93 923 Trehalose Biosynthesis Gene Families AT4G27550 61.7 2.9e-300 1028.1
Car18g00415 . 87 913 Trehalose Biosynthesis Gene Families AT4G27550 60.3 1.6e-290 995.7
Car16g01107 . 1 957 Trehalose Biosynthesis Gene Families AT4G17770 69.2 0.0e+00 1320.1
Car10g00127 . 1 832 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1104.7
Car19g00792 . 5 250 Trehalose Biosynthesis Gene Families AT4G17770 59.3 2.9e-83 307.4
Car03g01201 . 5 238 Trehalose Biosynthesis Gene Families AT4G17770 62.0 1.4e-82 305.1
Car06g00576 . 98 266 Trehalose Biosynthesis Gene Families AT4G17770 78.4 2.5e-74 277.7
Car04g01747 . 88 263 Trehalose Biosynthesis Gene Families AT4G17770 62.5 1.3e-59 228.8
Car11g00104 CCT,CST,ECH 1 152 Trehalose Biosynthesis Gene Families AT4G17770 63.8 1.3e-51 202.2
Car16g01107 . 1 963 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1211.1
Car10g00127 . 1 837 Trehalose Biosynthesis Gene Families AT1G68020 61.7 0.0e+00 1081.6
Car19g00792 . 1 245 Trehalose Biosynthesis Gene Families AT1G68020 64.5 4.3e-87 320.1
Car03g01201 . 1 246 Trehalose Biosynthesis Gene Families AT1G68020 62.6 2.1e-86 317.8
Car06g00576 . 93 282 Trehalose Biosynthesis Gene Families AT1G68020 67.2 6.9e-69 259.6
Car04g01747 . 89 252 Trehalose Biosynthesis Gene Families AT1G68020 66.5 2.2e-59 228.0
Car11g00104 CCT,CST,ECH 1 155 Trehalose Biosynthesis Gene Families AT1G68020 67.1 2.8e-54 211.1
Car16g01107 . 1 962 Trehalose Biosynthesis Gene Families AT1G06410 58.5 0.0e+00 1103.2
Car10g00127 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.3 3.1e-303 1038.1
Car19g00792 . 1 242 Trehalose Biosynthesis Gene Families AT1G06410 78.5 2.4e-106 384.0
Car03g01201 . 1 245 Trehalose Biosynthesis Gene Families AT1G06410 72.2 5.0e-104 376.3
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT1G06410 64.9 1.5e-60 231.9
Car06g00576 . 97 271 Trehalose Biosynthesis Gene Families AT1G06410 66.7 1.3e-59 228.8
Car11g00104 CCT,CST,ECH 1 155 Trehalose Biosynthesis Gene Families AT1G06410 66.5 9.0e-53 206.1
Car10g00127 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1106.3
Car16g01107 . 1 961 Trehalose Biosynthesis Gene Families AT1G70290 50.1 4.8e-269 924.5
Car03g01201 . 1 249 Trehalose Biosynthesis Gene Families AT1G70290 61.0 7.8e-86 315.8
Car19g00792 . 1 252 Trehalose Biosynthesis Gene Families AT1G70290 60.5 8.0e-83 305.8
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT1G70290 74.1 1.6e-70 265.0
Car06g00576 . 94 280 Trehalose Biosynthesis Gene Families AT1G70290 59.3 4.7e-59 226.9
Car11g00104 CCT,CST,ECH 1 156 Trehalose Biosynthesis Gene Families AT1G70290 68.6 9.9e-57 219.2
Car10g00127 . 1 851 Trehalose Biosynthesis Gene Families AT1G23870 67.1 0.0e+00 1220.3
Car16g01107 . 1 961 Trehalose Biosynthesis Gene Families AT1G23870 54.9 3.8e-309 1057.7
Car03g01201 . 1 246 Trehalose Biosynthesis Gene Families AT1G23870 61.8 4.1e-85 313.5
Car19g00792 . 1 257 Trehalose Biosynthesis Gene Families AT1G23870 58.8 1.5e-82 305.1
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT1G23870 75.3 6.8e-72 269.6
Car06g00576 . 96 270 Trehalose Biosynthesis Gene Families AT1G23870 62.7 3.3e-58 224.2
Car11g00104 CCT,CST,ECH 1 156 Trehalose Biosynthesis Gene Families AT1G23870 69.2 3.6e-57 220.7
Car10g00127 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 66.7 0.0e+00 1211.4
Car16g01107 . 1 966 Trehalose Biosynthesis Gene Families AT1G60140 52.5 4.5e-302 1034.2
Car03g01201 . 1 250 Trehalose Biosynthesis Gene Families AT1G60140 60.0 1.7e-83 308.1
Car19g00792 . 1 246 Trehalose Biosynthesis Gene Families AT1G60140 60.2 3.2e-82 303.9
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT1G60140 71.3 1.7e-67 255.0
Car11g00104 CCT,CST,ECH 1 160 Trehalose Biosynthesis Gene Families AT1G60140 68.1 9.4e-58 222.6
Car06g00576 . 95 275 Trehalose Biosynthesis Gene Families AT1G60140 59.0 2.1e-57 221.5
Car10g00127 . 27 839 Trehalose Biosynthesis Gene Families AT2G18700 59.5 2.3e-298 1021.9
Car16g01107 . 1 962 Trehalose Biosynthesis Gene Families AT2G18700 51.7 1.6e-283 972.6
Car03g01201 . 1 242 Trehalose Biosynthesis Gene Families AT2G18700 62.9 2.0e-79 294.7
Car19g00792 . 1 242 Trehalose Biosynthesis Gene Families AT2G18700 60.9 9.1e-77 285.8
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT2G18700 65.7 1.1e-58 225.7
Car06g00576 . 99 271 Trehalose Biosynthesis Gene Families AT2G18700 64.0 4.4e-55 213.8
Car11g00104 CCT,CST,ECH 1 157 Trehalose Biosynthesis Gene Families AT2G18700 63.9 1.0e-48 192.6
Car02g00661 . 49 481 Trehalose Biosynthesis Gene Families AT4G24040 55.6 2.5e-140 496.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0036842 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00576 Car_Chr06 FPKM 1.427673 1.76488 2.03759 1.984183 1.94299 1.252552 1.698701 0.980727 2.107499 1.238436