Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00579 ATGACGGATTACCGATTTTCCACCATGAATCTCTGGACCGACGAGAACGCGTCGGCCATGGATGCTTTCACGAACTCCGATCTGTCTTCTTACTGGGCTCCGTCGGCGGCGTCGCCTCAATCTCTCCACCACCCACCTCCGACGCAATCCTCCGCCTCCACCACTACTCCACCGTCCGTCCCTTCCAAGTCTATCGCTGTCTTGAACCAGGAGACTCTGCAGCAGCGCCTCCAGGCGCTCATCGACGGTGCTAGAGAGAGTTGGACGTACGCGATTTTCTGGCAGTCGTCGTATGATTATTCCGGCGGGTCGGTTTTGGGGTGGGGAGATGGGTATTATAAAGGCGAGGAGAATAAAGGGAGAGGAAAAACGAAAATGGTTTCCTCTGCGGCGGAGCAGGCTCACCGGAAGAAGGTGCTCCGGGAGCTTAACTCGTTGATTTCCGGCTCCGCTACCGGACTGGACGATGTGGTGGATGAAGAGGTTACCGACACCGAATGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTGTTAATGGAGTTGGGTTACCGAGTCAGGCGCTTTTAAGCTCCCGGCCGATTTGGATATCCGGCGCCGACCGGCTGTCGGCGTCGGGATGTGATCGCGCTAGACAGGGGAGGATCTTCGGGTTGCAGACGATGGTGTGTATTCCATTACCAAACGGCGTCGTCGAAATGGGTTCGACGGAAGCGATTTACATAACGACGGATTTGATGAACAAGGTCAAGACTCTGTTTAATTTCAACAATCTCGAAACGGGTTCTTGGCAATCGGGAACCACCGGCGTCACCGTCGCCGACGAAGGGGAAAACGACCCATCGTCGTTATGGATCAGTGAGCCGTCGAGCACCATTGAAATGAAGGATTCGATTACCACCACCGTACTTTCCGGCGGCGCGTCAGCTAAGCCAATCCATTCAGAAAATCCCAGTTCGAGCAGCTTAACGGAAAATGCCAGCAGGAAACAGACCCCAAGCTTGAATTTCCCCGATTACGCCGCCGCGGCCGCCACCACGAACCCATCATTCAAGTCGGAATCCGGTGGGATGCTGAGCTTCGGCAACAAAAGTCTCTTCTCCGGTAACTCACAGAATGAGAAAAAGAAATCTCCGACTCGTCGGAGAAGCACCGACGAAGGGATCCTCTGTTTCACCACCGACGCGATCTTACCCTTTTTCGGGAAGGTGAAAATCATGGGGTCTGACGCGATGATCCGAGTTGAATGCAGTAAAAAGAATCATCCGGCTGCGAGATTGATGGCGGCATTGAAGGATTTGGATTTGGAAATGATTCACGCGAGTGTTTCTGTAGTGAATGATTTGATGATTCAACAGGCGGCGGTGAAGATGGAGAGCAGAGTATATACGACGGAGCAGCTGAAAATGGTGCTGATGGCGGAAGTTCGACGGTGCCGGCGTTGA 1443 53.29 MTDYRFSTMNLWTDENASAMDAFTNSDLSSYWAPSAASPQSLHHPPPTQSSASTTTPPSVPSKSIAVLNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGGSVLGWGDGYYKGEENKGRGKTKMVSSAAEQAHRKKVLRELNSLISGSATGLDDVVDEEVTDTEWFFLVSMTQSFVNGVGLPSQALLSSRPIWISGADRLSASGCDRARQGRIFGLQTMVCIPLPNGVVEMGSTEAIYITTDLMNKVKTLFNFNNLETGSWQSGTTGVTVADEGENDPSSLWISEPSSTIEMKDSITTTVLSGGASAKPIHSENPSSSSLTENASRKQTPSLNFPDYAAAAATTNPSFKSESGGMLSFGNKSLFSGNSQNEKKKSPTRRRSTDEGILCFTTDAILPFFGKVKIMGSDAMIRVECSKKNHPAARLMAALKDLDLEMIHASVSVVNDLMIQQAAVKMESRVYTTEQLKMVLMAEVRRCRR 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3330995 3332860 + Carg23384-RA Car06g00579 150315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00579 480 MobiDBLite consensus disorder prediction 305 333 - -
Car06g00579 480 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 73 253 IPR025610 -
Car06g00579 480 MobiDBLite consensus disorder prediction 362 383 - -
Car06g00579 480 MobiDBLite consensus disorder prediction 34 62 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00579 K13422 MYC2; transcription factor MYC2 - csv:101205372 605.134
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g01373 Car06g00579 CCT
Car06g00579 Car16g01097 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00579 Car-Chr6:3330995 Car06g00850 Car-Chr6:6669385 3.46E-28 dispersed
Car17g00395 Car-Chr17:2621599 Car06g00579 Car-Chr6:3330995 4.18E-15 transposed
Car16g01097 Car-Chr16:9398140 Car06g00579 Car-Chr6:3330995 1.17E-30 wgd
Car19g00192 Car-Chr19:1804983 Car06g00579 Car-Chr6:3330995 1.17E-166 wgd
Car02g01373 Car-Chr2:9070511 Car06g00579 Car-Chr6:3330995 1.66E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g671 Blo02g00993 . . . . . Bma07g00930 Bma14g00153 Cmo06g00657 Cmo16g01208 Cma02g01614 . Car02g01373 . Sed08g1916 Cpe14g00960 Cpe05g00176 Bhi11g00156 Tan01g2188 Cmetu06g1892 . Hepe06g1772 Mch10g1654 . Cla10g00159 Cam10g0160 Cec10g0170 Cco10g0168 Clacu10g0161 Cmu10g1010 Cre10g0420 Cone8ag0471 Cone12ag0465 . . Lsi07g01198 . Chy04g00093 Cme06g02473 Blo03g00858 Blo19g00189 Bda07g00099 Bda09g00724 Bpe08g00833 Bpe11g00336 . . Sed01g4108 Cmo02g01657 Cmo19g00251 Cma06g00648 Cma16g01157 Car06g00579 Car16g01097 . Cpe15g00214 Bhi05g00500 Tan07g1978 Cmetu04g2523 Lac11g2414 Hepe06g1020 . Lcy12g1947 Cla09g01129 Cam09g1183 Cec09g1195 Cco09g1216 . . Cre09g1145 . Csa03g04609 Chy06g02143 Cme04g00117
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001444 2 2 4 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 3 1 2 2 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00579 Car_Chr06 FPKM 8.285272 10.045352 2.724198 3.055846 174.09436 166.660721 164.171936 0.276776 0.137463 0.0