Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00584 ATGGATTCACGGGAGAGGTCGATGCCTTCTGTTCATCAACCTCAGCCACAATCTACTCCACCCAATAGAATGATGGGAAATGCTTCTTATTCCACCAATTTCCCCAACAACAACAACAACAATGCTTCCCCATTGATCAACCCCAATTCCACCGCTGCTCAGATGATGTCATCCGCATCGCGATTTCCCTTCAACTCCATGATGGGTTCTGCTTCTAAGCCTTCGGACTCGCCTAATGCCGGTTCTTATGACGGATCGCAGTCCGAATTGCGTGGTGGTGGCTTCAACATTGATTCCGGGAAGAAGAAGAGAGGCCGTCCGAGGAAGTATTCGCCTGATGGCAACATCGCTTTGGGTTTATCGCCAACCCCCGTCACTTCTTCCGCCGCTCCCGGTGATTCTGCTGGCATGCACTCGGCGGATCCTCGCCCGAAAAAGAACAGGGGACGGCCGCCGGGTACTGGGAAGAAGCAGATGGATGCTTTGGGAACCGGCGGTGTTGGCTTTACCCCTCATGTCATTCTGGTGAAACCCGGAGAGGACATTGCTTCGAAAGTTGTGGCATTTTCACAGCAGGGGCCTCGGACTGTTTGTGTTCTCTCTGCCCATGGTGCTGTCTGCAATGTTACCCTTCACCAACCCACAATGGCAGCTGGCAGTTTTACCCCAAGTATAAAGATATTTCTATTGGTGATCTTCACTCTTGACTCATTAATCCTGAAAAGTAATGGAAAAGAAAAAACCTTTTCTGGCTGTATTATTTCCTTTGAACACAAGGTGTCACCAGTTCTATTGCTTTTTAATCTAATGCAGGGCCGATATGAAATCATCTCTCTATCAGGCAACTTCTTGATTTCTGACAGTAACGGCAATCGAAATCGAACTGGTCGCTTAAGCGTGTCTCTAGCAAGTGCGGATGGACAAGTCCTTGGTGGAATTACCGACATGTTAACAGCAGCATCTACAGTTCAGGTTATAGTGGGTAGCTTTCTTGTGGATGGGAAAAAGCTGGACTCAAGTACACAGAAATCTGGGCCATCTTCTACATCACCCAATATGTTAAACTTCAGTACACCTGCGGCGGCAACAGGCTGCCTCTCTGAAGGTGCATCAAATAACTCATCAGATGACAATGATGGTAGCCCTTTAAGCCGGGCGCCTGGACTCTACACCAATGCCAACCAACCAATTCATAATATGCAGATGTATCAATTGTGGGGTAGTCGAAATCAATAA 1236 47.98 MDSRERSMPSVHQPQPQSTPPNRMMGNASYSTNFPNNNNNNASPLINPNSTAAQMMSSASRFPFNSMMGSASKPSDSPNAGSYDGSQSELRGGGFNIDSGKKKRGRPRKYSPDGNIALGLSPTPVTSSAAPGDSAGMHSADPRPKKNRGRPPGTGKKQMDALGTGGVGFTPHVILVKPGEDIASKVVAFSQQGPRTVCVLSAHGAVCNVTLHQPTMAAGSFTPSIKIFLLVIFTLDSLILKSNGKEKTFSGCIISFEHKVSPVLLLFNLMQGRYEIISLSGNFLISDSNGNRNRTGRLSVSLASADGQVLGGITDMLTAASTVQVIVGSFLVDGKKLDSSTQKSGPSSTSPNMLNFSTPAAATGCLSEGASNNSSDDNDGSPLSRAPGLYTNANQPIHNMQMYQLWGSRNQ 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3348786 3357555 + Carg23379-RA Car06g00584 150320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00584 411 ProSiteProfiles PPC domain profile profile. 165 352 IPR005175 -
Car06g00584 411 Pfam Plants and Prokaryotes Conserved (PCC) domain 171 330 IPR005175 -
Car06g00584 411 MobiDBLite consensus disorder prediction 8 86 - -
Car06g00584 411 MobiDBLite consensus disorder prediction 1 162 - -
Car06g00584 411 MobiDBLite consensus disorder prediction 365 393 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00584 - - - cmax:111498434 647.121
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00584 Car16g01092 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00584 Car-Chr6:3348786 Car05g00844 Car-Chr5:8331160 4.15E-51 dispersed
Car16g01092 Car-Chr16:9376559 Car06g00584 Car-Chr6:3348786 0 wgd
Car19g00197 Car-Chr19:1854847 Car06g00584 Car-Chr6:3348786 2.82E-76 wgd
Car02g01368 Car-Chr2:9054123 Car06g00584 Car-Chr6:3348786 8.52E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g637 . . . . . . Bma07g00961 . Cmo06g00662 Cmo16g01203 . . . . . Cpe14g00855 . Bhi11g00147 . . . Hepe06g1765 Mch10g1643 . . . . . . . . . . . . . . Chy04g00085 . Blo03g00838 Blo19g00178 . . . . . . . . Cmo19g00256 Cma06g00655 Cma16g01152 Car06g00584 Car16g01092 . Cpe15g00219 . . . . . . . . . . . . . . . . Chy06g02136 Cme04g00108
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005186 0 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00584 Car_Chr06 FPKM 3.478495 5.504056 4.282481 5.188457 5.103467 3.104694 4.75674 6.993804 5.302821 5.318561