Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00588 ATGGACCCCACTGATGCCGACCTCGCCGATCCTTCTCATGCCCGTCTTTCCGTTTCCTCTGAACCTTCCTCCGCCTCCGCTGCTGGCGCCAAGTACAAGCTACTCTCTCCGGCTAAGCTCCCGATCTCCAGGTCCCCTTGCATTACCATCCCTCCCGGTCTCAGTCCCACTTCCTTTCTCGAGTCTCCCGTTTTGCTCACCAACTTGAAGGTAGAGCCTTCTCCGACTACCGGGTCCTTTACTAAGCTTCCAATGGCACACGACTCCTCTAGCTCAGCTATTTATTCAATGACCACCATGGCTTTCTCAAATACGCATGCCTCAGACGAAGGAAGATCCAGCTATTTCGAGTTCAAACCTTATGCTGGACCGAATATGGTTCCTGCAGATTTGAGTCATCGGAAAGGCGAACAATCCAGAGAAGTTCAAGTTCAGGGCCAACCTCAACCATTTACTGCTCCGCCCATGACTAAAAATGAGATCAACGTCAATTCTAATGATTTGAGTCGGTCGACTCAGATGGATACAGTTGCCTCAAGGGCTAGTGTTCCTGAAGTTGATGGAGACGATTTCAACCATAGTTTGAACACAAATACCGGGGTTCAGCCCCCACAATCTGATCCAAAAGCCAGTGGCATTCAAGTAGTTTCTGATAGGTTATCTGATGATGGATATAACTGGCGTAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCGCGTAGCTATTATAAATGTACCCATCCTAACTGTGAAGTGAAAAAACTCTTCGAACGCTCTCACGATGGGCAGATAGTTGATATTATCTATAAGGGTACCCATGATCATCCTAAACCTCAGCCAAGTCGGCGATATTCTGCCAGTGCTTCTATGAATGTTCAAGAAGATGGGCCTGATAAGCCTTCACCTTTAACTGGTCAAGATGACAGGTCCTGCGTAATATATGCTCCGGTGGTGCGTACCATTGAGCCAAATGGAACTCCAGAACCATCCCATGCTGCTAACGATAGCATGGCCGAAGGCGTAGGAACAACTCTGCCACCCAGGAGTCATGATGAGGTTGACGATGATGACATATTCTCGAAGCGGAGGAAAATGGAACTTGGAGGTTTTGATGTCTGCCCAATGGTTAAGCCGATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGCGAGGTTGATATACTGGATGATGGGTATCGCTGGCGTAAATACGGCCAGAAGGTAGTGAGAGGAAACCCGAACCCAAGGAGTTATTACAAGTGCACAAATGTTGGATGTCCTGTTAGAAAACATGTTGAAAGAGCATCCCATGACCCAAAAGCTGTAATAACTACATACGAGGGGAAACATAATCACGACGTTCCCACAGCAAAAACGAGTAGCCATGAGGTCCAAGGCTCATTGACAATTGCACCATCAAGGTATAGACTTGAAGAGAGTGACACCATAAGCCTTGATCTTGGCGTTGGCATTGGCGCCGGTGGTGAGAATAGATCGAACGAATACAGGCAGGCATTTCATTCCCAACTTGCTGAAAACCAAAATCCAAATGGCAATTTCAACTTCGAAATAGTTCAAGAAAACTCACCCCCAACCTATTTCGGTGTTCTCGATCGGGGTATAAGCCAGCATGGATCAAGAGAGAGTTTGAGCGAAAGCCGCACCATGTCGCTAAACCATTCCTCTCACCCATATCCTCCTAGCATTGAGAGAATACTAACAGGGCCATAA 1737 47.21 MDPTDADLADPSHARLSVSSEPSSASAAGAKYKLLSPAKLPISRSPCITIPPGLSPTSFLESPVLLTNLKVEPSPTTGSFTKLPMAHDSSSSAIYSMTTMAFSNTHASDEGRSSYFEFKPYAGPNMVPADLSHRKGEQSREVQVQGQPQPFTAPPMTKNEINVNSNDLSRSTQMDTVASRASVPEVDGDDFNHSLNTNTGVQPPQSDPKASGIQVVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIVDIIYKGTHDHPKPQPSRRYSASASMNVQEDGPDKPSPLTGQDDRSCVIYAPVVRTIEPNGTPEPSHAANDSMAEGVGTTLPPRSHDEVDDDDIFSKRRKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHEVQGSLTIAPSRYRLEESDTISLDLGVGIGAGGENRSNEYRQAFHSQLAENQNPNGNFNFEIVQENSPPTYFGVLDRGISQHGSRESLSESRTMSLNHSSHPYPPSIERILTGP 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3389291 3393843 + Carg23560-RA Car06g00588 150324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00588 578 ProSiteProfiles WRKY domain profile. 216 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car06g00588 578 MobiDBLite consensus disorder prediction 546 578 - -
Car06g00588 578 MobiDBLite consensus disorder prediction 141 170 - -
Car06g00588 578 MobiDBLite consensus disorder prediction 272 311 - -
Car06g00588 578 MobiDBLite consensus disorder prediction 131 170 - -
Car06g00588 578 Pfam WRKY DNA -binding domain 222 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car06g00588 578 Pfam WRKY DNA -binding domain 398 454 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car06g00588 578 MobiDBLite consensus disorder prediction 324 357 - -
Car06g00588 578 MobiDBLite consensus disorder prediction 546 566 - -
Car06g00588 578 MobiDBLite consensus disorder prediction 1 27 - -
Car06g00588 578 ProSiteProfiles WRKY domain profile. 392 457 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00588 Car-Chr6:3389291 Car16g00952 Car-Chr16:7891861 2.26E-95 dispersed
Car10g00752 Car-Chr10:3971361 Car06g00588 Car-Chr6:3389291 2.81E-92 dispersed
Car11g01463 Car-Chr11:11830526 Car06g00588 Car-Chr6:3389291 3.13E-13 transposed
Car16g00907 Car-Chr16:7429862 Car06g00588 Car-Chr6:3389291 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3683 PF03106 WRKY 3.30E-25 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00588 - - bhj:120090463 1017.68