Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00609 ATGTCGGAGAGTTTTGCTTACAAGAGCGTGAAGATTGTAATCTTCTCAAATAAACTCAACTTCCTTATGTCTTTTGGGCCGCTAGCAATTCTTGTGGATAAGTTGACTGGACACAATAGTTGGGTCTTCTTCCTGAGTCTATTGGGTATCATACCGTTCGCTGAGCGGTTAGGTTATGCGACAGAGCAGCTGGCTTTTTACACTGGGCCTACAGGTGTTGTAAAATATCTGCAACTGCAAAAATGTTCTTTTTGCACTGTAACTTCTGGTGCTGATTCATCTGTTGCCATTAGTCTACTGAATCAGTACAATCCTGAGAAGGGGAGGGAGAGGGGGAGGGAGGGTGCTGTCGTAGTGTACTATATACAAATTATCGTAGTTGTGAAAATCTCATGTGTATTTGTTGGCGGTCTACTAAATGCTACTTTTGGAAATGCAACAGAACTCATCATATCAATTTTTGCACTGAAAAATCAAATGATACGTGTTGTTCAGCTATCCTTGCTAGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGCTTGTTTTCAACAAAAAGGAACAGACTTTTAACAAGGCAGCTGCTGGTGTCAACTCAGGATTGTTGTTAATGGCTGTCATGGGCCTTCTTTTTCCTGTTCTTCTCAACTACACCCACAGCGAAGCCCATTTTGGGAAGTCGGAATTGGCACTTTCTAGATTCAGCAGTTGCATTATGCTTCTGGCTTATGCTGCTTATCTTTTCTTTCAGTTAAAAAGTCAGAGGAATAATTATTCTTCCGTTTATGAGGAAGAAACTCGGAGTGAAGAAATCTCAGATGAAGATGAAGCTCCTGAGATCACCAAGTGGGAATCAGTTATCTGGCTATCAATTTTGACTGCCTGTATCTCCGTTCTATCAGAATACTTGGTTGATGCAATCGAAGTTGCATCTGAATCATTGAAAATCCCAGTGTCGTTTATTAGTGTTATACTGCTTCCGATTGTGGGGAATGCTGCTGAGCATGCAAGCGCTGTTATGTTTGCTATGAAAGATAAGCTTGATATTTCTCTGGGTGTAGCCATCGGATCATCAACCCAGATATCTATGTTCGGGGTTCCCTTCTGTGTGGTAATTGGGTGGATTATGGGACAACCAATGGACTTGAACTTTAAACTCTTCGAGACAGCTACACTTTTTATAACTGTAATAGTAGTAGCTTTCTTGCTGCAGGAAGGAACTTCAAATTACTTCAAGGGACTTATGCTTATCCTTTGTTATCTGATAGTGGCAGCTAGTTTTTTCGTGCACGTTGATCCTCCTTTACCCGGTGAAGGGCAAACTGGAGAGTTTGAAAGCGTAGCTGAGGAGGAACCTTCAGTGAAATTTAGAAGCGCTCTCTCCAAGAAAATTTGGCTCAAAGGTCTCCAAAGATGTGGGAAGAGCTGCAGGCTACGTTGGACGAATTACCTGCGCCCCGACCTCAAGCATGGCCAATTTTCGGATATGGAAGAGCAAACTATTGTCAAGCTACATTCTGTTGTTGGGAACAGGTGGTCTCTGATTGCAGCTCAGTTACCTGGCCGCACCGACAATGATGTCAAGAATCACTGGAACACTAAGCTGAAGAAGAAGCTATCAGGTATGGGCATTGATCCAGTTACTCACAAACCATTTTCCCATCTAATGGCTGAAATCGCCACCACTTTAGCCCCTCCACAAGTTGCCCATCTTGCTGAGGCTGCGCTTGGCTGCTTCAAAGACGAAATGCTTCACCTTCTTACTAAGAAGTGTGTTGACTTCCAGCTCCAACAGGCCAATGTACCGCCGGGAAGTTCCTCAGGAACTTATAATCACAACAACCAAAATGAGAAAGATGGTACTGTCGAGAATATCAAACTTGGTTTGTCAAGAGCCATTCAACAGTCTGATCTGATCACTCCATATAAGCCTTGGAATTCTACTGATGCAACAACAACGAACTTGGAGGGGACAAGCAATTGCTTCCCGGCATCAACGTCAGGATTTCAATACCCGCCGCCCTCGTTTGGCAATGAAGGGGACGTGCCATCATGGAGCCAGAGCATGTGTACGGGGAGTACATGCACTGGAGGAGAACAACAGGGGCAACTGCATGAAATCCTTGAAGAACACGGAGAGGAGCTATCAGAGGGTGGAAAAGAGATGAGAAATGGGACAAGTATATTCAGTTCAGACTCTGTGTTGTGGGATTTGCCATGTGATGATCTGATGAATCCAATAGTATGA 2271 43.9 MSESFAYKSVKIVIFSNKLNFLMSFGPLAILVDKLTGHNSWVFFLSLLGIIPFAERLGYATEQLAFYTGPTGVVKYLQLQKCSFCTVTSGADSSVAISLLNQYNPEKGRERGREGAVVVYYIQIIVVVKISCVFVGGLLNATFGNATELIISIFALKNQMIRVVQLSLLGSILSNMLLVLGCAFFCGGLVFNKKEQTFNKAAAGVNSGLLLMAVMGLLFPVLLNYTHSEAHFGKSELALSRFSSCIMLLAYAAYLFFQLKSQRNNYSSVYEEETRSEEISDEDEAPEITKWESVIWLSILTACISVLSEYLVDAIEVASESLKIPVSFISVILLPIVGNAAEHASAVMFAMKDKLDISLGVAIGSSTQISMFGVPFCVVIGWIMGQPMDLNFKLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPLPGEGQTGEFESVAEEEPSVKFRSALSKKIWLKGLQRCGKSCRLRWTNYLRPDLKHGQFSDMEEQTIVKLHSVVGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQVAHLAEAALGCFKDEMLHLLTKKCVDFQLQQANVPPGSSSGTYNHNNQNEKDGTVENIKLGLSRAIQQSDLITPYKPWNSTDATTTNLEGTSNCFPASTSGFQYPPPSFGNEGDVPSWSQSMCTGSTCTGGEQQGQLHEILEEHGEELSEGGKEMRNGTSIFSSDSVLWDLPCDDLMNPIV 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3537668 3542790 + Carg23539-RA Car06g00609 150345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00609 756 ProSiteProfiles Myb-like domain profile. 493 543 IPR001005 -
Car06g00609 756 Pfam Myb-like DNA-binding domain 499 541 IPR001005 -
Car06g00609 756 Pfam Sodium/calcium exchanger protein 41 259 IPR004837 GO:0016021|GO:0055085
Car06g00609 756 Pfam Sodium/calcium exchanger protein 294 433 IPR004837 GO:0016021|GO:0055085
Car06g00609 756 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 493 547 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00308 Car-Chr3:4150213 Car06g00609 Car-Chr6:3537668 1.84E-09 dispersed
Car06g00609 Car-Chr6:3537668 Car20g00598 Car-Chr20:3361033 5.73E-122 dispersed
Car09g00745 Car-Chr9:4419245 Car06g00609 Car-Chr6:3537668 2.95E-06 dispersed
Car16g00941 Car-Chr16:7713872 Car06g00609 Car-Chr6:3537668 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3685 PF01699 Na_Ca_ex 8.60E-19 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00609 K07300 - twl:119990568 555.829