Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00629 ATGGCGATGCCTTCTCGGGAAGCAATTGATACTTTCATCGGCGTCACCGGAGCCTCCGAAGCGATCGCCGTTCAAAAGCTCGAGGCACATGGTGATGATCTCAATGCTGCTGTGAATGCATATTTCAATGAAGGAGATAGAAGTTCGTCCGTAAACGCACATCCGACCTCTGTTTCTGGTGATTATGATTTCATGGACATTGATGATCCAGTTGAAGTTGAACCCCAGGGTCCTCCTCAGTCTCTTCTATCTGCTGCTAGAGAGATTATGAATCCATTTTCATTACTTGATCAAAATCTCCGCCAGGGTTTATTTGACCACGCCTCTGATTTTACTAGTTCTGCTCCAATGGTGACTCATCCAAGAGAGGTGAGGGAGATTCCCATAGAATTTAGAGATGGTAGCCGACCATCTGGCCAATCTGGCCATGTGCTGACAATTGAGGATGTCACTGGGACTGTGGATGCCCATGGTCAAGAGGTTCGTGGGACTGTAGTAATTGATGATAACGAAGATGAAGAACCTCCAGTTGCTTCTGTAGCACATGCACCAGATTTAGAGCATCGGGCTATTTCAAGTCATGATTCTCGTGACAGAAATGCTATATCCGGTGCCTTTGAAAGTGCTGAGTTTCAAGACAGAAATGACATTGAAGAAGAAATGATTCGTGCTGCAATTGAGGCTTCAAAGAAAGATGTTGTGCAGGCTTATCCAAGTGATCCCTTAACTACACAAACTGATTTAAGCAATCTTAGGGCTCGAGAACATCTTTCTCACTTGAGTGATTTAGAATTATCACCTGCAGCTTCATCTATCAAGCCAGAGGAAGATTTCCCTGAGCGAGGGGAGAACATTGGAGGATCAAAAACAGAAACTTCGAAGTTAACTGATGTGGAACTGAGGAAGTTTGATGAAGTTACATTGGAAAAACTTAGGATGGAAACAGGAAGTACGTCTGCTCAAGATGAGGTTGAAGATCTAGAGGAAGTTAATTTAATTAGGCATCGGACCAAACGCAAGTCCTCTGGCAATGCTGAGCCTGCAAAGGGGGTTGAAATTGTTGATTTAAGCCTTGCATCAAGTCCCAAGCATCCTGATAGTAGTAATAATCCACAGCACAATGGGAATGCATTTCAGTCTGATGAGTGGGGTGGAATTTCTTCAGAGGAGCATGATGAAGCAGTCATGCTTGAGGCTGCCATGTTTGGTGGAGGTTCTGAAGGAAGTTCATATCGTTTTCCATCTGCACCTCATGAATTCATGAGAAATCAAGGTTCATATGTACAGCCAGCCCCTCGCCCTCCTTCACCCTCCTTAGTAGCTCAGCGCTTGATAAGGGAACAGCAGGATGATGAGTATCTGGCAGCTTTAGAAGCTGACAGAGAAAAAGAACTGAAGGCCATGGCTGAAGCTGCAGCTGTTCGTGAAAAAGAAAGACAGAGAGAGGAAGAATCTCGTCAGAAACTGGATGCTGAGAAGGAACTTGAAAGACATTTGGCAGAAATAGAGGCTTCTCTTCCCAGTGAACCAAGATCAGATGACGAGAATGCGGTGACACTGTTAGTGCGCATGCCAGATGGCAGTCGCCGCGGTCGTCGATTTCTCAAATCTGATAAGCTACAGTGTCTCTTTGACTTCATTGATATCGGTAGAGTTGTCAAGCCTGGTTCCTACAGATTGGTGAGGCCATATCCTCGAAAAGCTTTTGGAGATGGGGAGAGTTCCTTAACATTGAATGAACTTGGAGTTAACAGCAAGCAAGAAGCTTTTTATCTGGAGTTGATTTAA 1788 44.74 MAMPSREAIDTFIGVTGASEAIAVQKLEAHGDDLNAAVNAYFNEGDRSSSVNAHPTSVSGDYDFMDIDDPVEVEPQGPPQSLLSAAREIMNPFSLLDQNLRQGLFDHASDFTSSAPMVTHPREVREIPIEFRDGSRPSGQSGHVLTIEDVTGTVDAHGQEVRGTVVIDDNEDEEPPVASVAHAPDLEHRAISSHDSRDRNAISGAFESAEFQDRNDIEEEMIRAAIEASKKDVVQAYPSDPLTTQTDLSNLRAREHLSHLSDLELSPAASSIKPEEDFPERGENIGGSKTETSKLTDVELRKFDEVTLEKLRMETGSTSAQDEVEDLEEVNLIRHRTKRKSSGNAEPAKGVEIVDLSLASSPKHPDSSNNPQHNGNAFQSDEWGGISSEEHDEAVMLEAAMFGGGSEGSSYRFPSAPHEFMRNQGSYVQPAPRPPSPSLVAQRLIREQQDDEYLAALEADREKELKAMAEAAAVREKERQREEESRQKLDAEKELERHLAEIEASLPSEPRSDDENAVTLLVRMPDGSRRGRRFLKSDKLQCLFDFIDIGRVVKPGSYRLVRPYPRKAFGDGESSLTLNELGVNSKQEAFYLELI 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3680438 3685420 + Carg21653-RA Car06g00629 150365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00629 595 Pfam UBX domain 513 587 IPR001012 GO:0005515
Car06g00629 595 MobiDBLite consensus disorder prediction 361 383 - -
Car06g00629 595 MobiDBLite consensus disorder prediction 335 392 - -
Car06g00629 595 MobiDBLite consensus disorder prediction 474 493 - -
Car06g00629 595 Pfam UBA-like domain 6 47 - -
Car06g00629 595 Coils Coil 474 501 - -
Car06g00629 595 MobiDBLite consensus disorder prediction 265 290 - -
Car06g00629 595 ProSiteProfiles UBX domain profile. 513 591 IPR001012 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00629 - - - cmos:111449021 1090.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00629 Car-Chr6:3680438 Car13g00715 Car-Chr13:8359571 4.99E-12 dispersed
Car16g00956 Car-Chr16:7986719 Car06g00629 Car-Chr6:3680438 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g369 . . . . . . . . Cmo06g00724 Cmo16g01046 . . . . . . . . . . . . . . Cla10g00353 . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g01003 Car06g00629 . Cpe08g00807 . . . . . . . . . . . . . . . . . Chy06g01938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00629 Car_Chr06 FPKM 0.507812 0.0 1.585059 2.016955 8.358429 9.775793 9.870802 6.131779 4.991042 6.101932