Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00652 ATGGCGACCAAATTGACGTTGTCGTTAGCGTCCTTGAGTTCGCTTACTGTTCCGATTCAGAATCAGAAACCGGCAGCTTCTCTGTTTTCGTCTTCTGCAAGATCCCAATTGATTAGGGTTTCTAGCCGGCGTGTGCTTCTTCGACGGCGGGTGCGTCTTCCACCTCCCCGGGCAACTACTGATCAACCAGGTCAGGTTGGGGAAGATGAGGTTGTCGATAGTAATGTCCTTCAATATTGTAGTATAGACAAAAAGGAGAAGAAGTCCATTGGAGAACTTGAGCAAGAATTTCTCCAAGCTTTACAGGCATTCTATTATGAGGGTAAAGCAATTATGTCAAACGAGGAATTTGATAATCTCAAGGAAGAATTAATGTGGGAAGGCAGCAGTGTTGTCATGCTAAGTTCTGATGAACAAAAGTTTTTGGAGGCCTCAATGGCATATGTATCTGGAAATCCAATTTTGACGGATAAAGAATTTGACGAATTGAAGATGAGACTTAAGATGGAAGGGAGTGAAATTGTGGCTGAGGGCCCCCGTTGCAGTCTCCGAAGTCGAAAGGTTTATAGTGATCTCTCTGTGGACTACTTTAGGATGTTCCTCTTGAATGTTCCAGCCACTGTAGTTGCACTGGGACTGTTCTTCTTCCTGGATGATATCACTGGATTTGAAATTACATACTTGTTGGAGCTCCCAGAGCCATTCAGTTTCATCTTCACTTGGTTTGCTGCTGTGCCATTCCTAGTTTGGTTAGCTCTTACCCTTACAAATGCAGTTGTTAGAGACTCTTTGATCTTGAAGGGCCCTTGTCCAAACTGTGGAACTGAGAATGTCTCCTTCTTTGGCACCATATTGTCAGTTTCAAGCGGTGGCAAAACAAACAATCTCAAGTGCTCAAACTGTTCAACTGAGCTGGTGTATGACTCGAAAACCCGCCTGATCACATTACCAGAAGGAAGCAACGCATAA 969 44.07 MATKLTLSLASLSSLTVPIQNQKPAASLFSSSARSQLIRVSSRRVLLRRRVRLPPPRATTDQPGQVGEDEVVDSNVLQYCSIDKKEKKSIGELEQEFLQALQAFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGNPILTDKEFDELKMRLKMEGSEIVAEGPRCSLRSRKVYSDLSVDYFRMFLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPFLVWLALTLTNAVVRDSLILKGPCPNCGTENVSFFGTILSVSSGGKTNNLKCSNCSTELVYDSKTRLITLPEGSNA 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3903791 3909874 - Carg21630-RA Car06g00652 150388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00652 322 PANTHER PGR5-LIKE PROTEIN 1B, CHLOROPLASTIC 1 322 IPR039987 GO:0009535|GO:0009773|GO:0016730
Car06g00652 322 PANTHER PGR5-LIKE PROTEIN 1A, CHLOROPLASTIC 1 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00652 - - - csv:101207034 544.273
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00652 Car-Chr6:3903791 Car13g00089 Car-Chr13:660602 7.72E-11 dispersed
Car06g00652 Car-Chr6:3903791 Car01g00554 Car-Chr1:3270540 2.21E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g428 . . . Bda08g00546 . . . . Cmo06g00756 . . . . . Sed04g0725 . . Bhi11g00231 Tan01g1955 Cmetu06g0227 . . Mch10g1485 . Cla10g00320 Cam10g0335 Cec10g0349 Cco10g0341 Clacu10g0332 Cmu10g1172 Cre10g0582 Cone8ag0342 . . . Lsi07g01369 . . Cme06g02654 . . . . . . Bma05g00799 . . . . Cma06g00732 . Car06g00652 . Cpe08g00786 . . . . . . . . . . . . . . . . Csa03g00343 Chy06g01982 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009124 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00652 Car_Chr06 FPKM 10.505327 13.763597 10.653708 10.179726 12.515147 13.650825 8.44286 26.061813 24.992956 25.649378