Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00657 ATGAGAAGGGTTCCTCGGCTTTGTTTTTCTTCTCATGCTCTTCTGTTCTTGATTACATTTCTCGTCGGATTTTGTTCCGCCATCACTGAGAAGGACATTCTGCTTCAATTCAAAGATGCCGTTACAGAGGATCCGTTTGATTTCTTGAAAACTTGGGTCGCCGGCGAGGATCATTGCCTAAACTTCAGCGGCGTGTTGTGTAATCCCGATGGTTTTGTGGAGAAGATTGTGCTATGGAACTCCAGCTTGGCTGGAACTTTATCGCCTGCCTTGTCCGGATTGAAGTTCTTGAGGACTTTGACATTGTATGGAAATAGATTTACTGGCAATATTCCAATTGAATATGGCAACATTGTTACTCTGTGGAAGCTGAACTTGAGCTCGAATGCTTTGTCGGGTTCGGTCCCGGAGTTCATTGGCGATTTGCCAAACATTCGGTTTCTAGATTTGTCTAGAAATGGCTTTACAGGGAAGATTCCTTCAGCTGTGTTCAAGAATTGTCTCAAAACTAGATTTGTTTCGTTTTCTCATAACAGATTTTCAGGTATGATTCCTTCAACAATTATGAACTGTTTGAACCTTGAAGGCTTTGATTTCTCAAACAATGATCTAAGTGGGAGTATTCCTTTGCAACTTTGTAACATTCAAAGATTAGAATATGTTTCTGTGAGAAGCAATTCACTTACTGGGAGTGTTCAAGGGCAGTTCTCTGCTTGCCAGAGCTTGAAACTTGTGGATCTTAGTAGCAATTCGTTCACTGGGTCGCCACCGATCGAGGTTCTCGGATTCAAAAACATCACTTATTTTAATGTCTCATATAACATGTTTAGTGGGGGAATTGCAGAGGTTGTAGGTTGTAGTGATAATCTGGAAGTTCTTGATGTTTCATGGAATGAATTAGATGGGGAGATCCCATTGAGCATTACAAAGTGTAGGAGCCTTAAAATCTTGGATTTGGAATCTAACAAGCTGGTTGGGAGGATCCCTGCTGAACTTGCAGCTTTGAACAAGCTTTTGGTTGTTCGGTTGGGTTATAACTCGATCACCGGGACAGTTCCAGCCATTTTCGGGAACATCGAGCTGCTTCAGGTTTTGAATTTGCACGGTCTTAAACTTGTTGGTGAGATACCTGCTGATATAACCAGTTGCAGGTTTCTTCTTGAGCTGGATATTTCTGGTAATGAATTGGAAGGGGGAATTCCTCAATCTGTTTATAACATGACATACCTTGAAATTCTTGATCTTCATGATAACCATCTGAACGGACTCATTCCGTCGACGCTCGGGAGCCTCTCGAAACTACAGTTTCTGGATCTATCTCGAAATCTACTGTCTGGTTCGATACCTCCTACTCTTGAAAATCTCACATTGCTGCACCATTTCAATGTCTCGTCCAATAACCTTTCAGGCATTATACCTCCCGCCAAGACGATCCAAGATTTCGGGCCATCTGCATTCTTAAACAATCCTTTTCTTTGTGGTGCTCCCTTGGATCCTTGCTCTGCTAATAACGCCACTGGCACGACTTCCATATCGAAGAAGCCTAAAGTTCTTAGTCTATCTGCAATCATTGCAATTGTAGCAGCAGTTGTGATCCTGGTCGGGGTTTGCGTGATCTCGATTTTGAACCTAATGGCTCGGACAAGGAAGGCAAGGAGCACGGAAATCATTGAGAGCACGCCACTCGGTTCAACCGATTCAGGTATCATAATTGGGAAGCTGGTTCTTTTTAGCAAATCTTTGCCATCAAAGTACGAAGACTGGGAGGCTGGCACCAAAGCGCTGCTCGACAAGGAATGTCTTATAGGGGGTGGCTCTATCGGCACTGTCTACAAGACAAGTTTCGACGTCGGAATCTCCATCGCTGTAAAGAAGCTGGAGACTCTTGGGAGGATCAGAACCCAAGACGAGTTCGAGACAGAAATTGGACGTTTGGGAAACATTAAACACCCGAACTTAGTCGCCTTTCAGGGATACTATTGGTCTTCGTCAATGCAGTTGATTCTATCGGAATTCGTTGTAAATGGCAATCTTTACGACAATTTACACGGTCTGAGTTATCCAGGCACCAGCACAGGCATTGGCAATACAGAGTTACATTGGTCTAGGAGATATCAAATTGCACTTGGAACAGCTAGAGCTCTTGCTTATCTTCACCATGATTGTAAGCCTCCAATTCTTCACCTCAACATAAAATCAACAAACATTCTGTTAGACGAAAACTACGAAGCCAAGTTATCCGATTACGGGTTGGAGAAGTTGCTTCCTGTTATGGACAATTACATCTTAACCAAATACCATACCGCTGTAGGCTACGTTGCACCGGAGTTGGCACAAAGTTTGAGAGTTAGCGAAAAATGCGATGTCTATAGTTTCGGAGTGATTCTACTGGAGTTGGTAACAGGGAGGAAGCCAGTTGAGAGTCCTAGAGCAAACCAGGTAGTGATTTTGTGTGAATATGTAAGGGAGTTGTTGGAAAGTGGTTCGGCTTCTGACTGTTTCGATCGGAACTTACGCGGGATTGCTGAAAGCGAGCTCATTGAAGTGATGAAGTTGGGATTGATCTGTACATCTGAGATCCCTTCAAAGAGACCGAGCATGGCCGAGGTTGTTCAAGTTCTTGAGTCGATAAGAAACGGATTAGGATCATAG 2652 43.48 MRRVPRLCFSSHALLFLITFLVGFCSAITEKDILLQFKDAVTEDPFDFLKTWVAGEDHCLNFSGVLCNPDGFVEKIVLWNSSLAGTLSPALSGLKFLRTLTLYGNRFTGNIPIEYGNIVTLWKLNLSSNALSGSVPEFIGDLPNIRFLDLSRNGFTGKIPSAVFKNCLKTRFVSFSHNRFSGMIPSTIMNCLNLEGFDFSNNDLSGSIPLQLCNIQRLEYVSVRSNSLTGSVQGQFSACQSLKLVDLSSNSFTGSPPIEVLGFKNITYFNVSYNMFSGGIAEVVGCSDNLEVLDVSWNELDGEIPLSITKCRSLKILDLESNKLVGRIPAELAALNKLLVVRLGYNSITGTVPAIFGNIELLQVLNLHGLKLVGEIPADITSCRFLLELDISGNELEGGIPQSVYNMTYLEILDLHDNHLNGLIPSTLGSLSKLQFLDLSRNLLSGSIPPTLENLTLLHHFNVSSNNLSGIIPPAKTIQDFGPSAFLNNPFLCGAPLDPCSANNATGTTSISKKPKVLSLSAIIAIVAAVVILVGVCVISILNLMARTRKARSTEIIESTPLGSTDSGIIIGKLVLFSKSLPSKYEDWEAGTKALLDKECLIGGGSIGTVYKTSFDVGISIAVKKLETLGRIRTQDEFETEIGRLGNIKHPNLVAFQGYYWSSSMQLILSEFVVNGNLYDNLHGLSYPGTSTGIGNTELHWSRRYQIALGTARALAYLHHDCKPPILHLNIKSTNILLDENYEAKLSDYGLEKLLPVMDNYILTKYHTAVGYVAPELAQSLRVSEKCDVYSFGVILLELVTGRKPVESPRANQVVILCEYVRELLESGSASDCFDRNLRGIAESELIEVMKLGLICTSEIPSKRPSMAEVVQVLESIRNGLGS 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3924543 3928120 + Carg21625-RA Car06g00657 150393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00657 883 ProSiteProfiles Leucine-rich repeat profile. 433 456 IPR001611 GO:0005515
Car06g00657 883 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515
Car06g00657 883 Pfam Protein kinase domain 600 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00657 883 Pfam Leucine rich repeat 388 444 IPR001611 GO:0005515
Car06g00657 883 ProSiteProfiles Protein kinase domain profile. 596 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g00657 883 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00657 Car-Chr6:3924543 Car14g00008 Car-Chr14:55752 1.31E-162 dispersed
Car06g00657 Car-Chr6:3924543 Car15g00179 Car-Chr15:952707 2.11E-177 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88937 PF00069 Pkinase 5.40E-35 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00657 - - csv:101212415 1550.8