Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00681 ATGTCGTCTTTTTCCCTTCCCACCACCTTCTCCCAACATCCTCCTCCTCCTTCCTCCGACCACCTTTGCTATGTCCATTGCAACGTTTGCGACACAGTTTTGGCGGTGAGTGTTCCTTGTGCTAGTTTGTTCAAAACGGTGACCGTCCGTTGCGGCCACTGCGCCAATCTTCTACCGGTCAACATGCGTGGTGGCATGCTTCTCCCTTCTCCCAATCACTTTCATCATACTGCTTTCTTCTCTCCCAATGCTCACAATTTTCTGGAAGAGATCTCAAATCCAAATCCAAATTTTGTGATGAACCAAACCGACGGAATTGATTTGGCAATGGCAACTCGGGTAGGAAACGATGTTCCAAGGCCACCCCCAAGCATAAATAGACGTGAGATAATTGAATTCATTTCTTAA 408 47.06 MSSFSLPTTFSQHPPPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRREIIEFIS 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4056093 4057992 + Carg21601-RA Car06g00681 150417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00681 135 Pfam YABBY protein 18 92 IPR006780 GO:0007275
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00681 Car15g01044 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00681 Car-Chr6:4056093 Car02g01086 Car-Chr2:7536427 8.41E-19 dispersed
Car15g01044 Car-Chr15:8220769 Car06g00681 Car-Chr6:4056093 1.58E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3690 PF04690 YABBY 3.40E-27 CL0114 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00681 K25796 - cmax:111498508 246.128