Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00685 ATGCAGCACTCCTCCAATTCCCAATCCCAGCCTCTAACGTCCCGCCGCGTTGCAGTCATAGGGGCCGGCGCCGGTGGCCTCGTCAGCGCCCGTGAGCTCGGCCGCGAGGGTCACAGTGTCGTCGTATTCGAACGGAGCAGTCAAATCGGAGGAACCTGGGTTTACTCGCCGGAAATTGAATCGGACCCACTTGGAGTTGACCCAAATCGGACTCGAATCCATAGCAGCCTCTACAAATCTCTACGCACAAATCTCCCCAGAGAACTCATGGGGGTTCGCGATTACCCGTTTGTGCCCCGAGAAGGGGAAGGTCGGGACCCGAGGCGATTTCCGAGTCATCTAGAGGTTTTGAAGTATTTGGAAGATTTCGCGAATGAATTTGGGATTTGTGAATTGGTGAGATTTGGAACTGAGGTGGTTTCTGCTGGGTTGGTGGAGATTGGGAAATGGAGGGTTCGATTTAGATGTGAAAGTGGGGATGTTGATGATGAGATGTTTGATGCTGTGGTTGTGTGTGTTGGGAATTATTCACAGCCTCGAGTGGCAGAGATTCCTGGGATTGATGAATGGCCTGGGGAGCAAATTCATAGTCACAATTATCGTGATCCCGAACCATTTCGGGGTAAGGTTGTTATCTTGATAGGTTTCTCTTCAAGTGGCACGGACATATCTCAGGAGCTCCTTGTGGTTGCCAAAGAAGTTCATATTGCATGCAGATCAGCTAAAACAGGGTTTTTGCTTGCAGAATCAGTTATTAGTAAAGTGTCATTCCACCCAATGATCAAAAGTGCCCGTAAAGACGGGACGGTGGTTTTTGAAGACGGGTGCGTCGTCTCGGCTGATGTTATTCTGCACTGCACTGGGTACAAGTATCATTTCCCTTTTCTTGAAACAAATGGCATTGTTACTGTGGACGACAACCGTGTCGGGCCTCTATACAAGCATGTCTTCCCACCAGCCTTGGCCCCGGGACTTTCGTTTGTCGGGTTACCATTTAAGGTTGTTCCTTTGCCCATGTTTGAGCTTCAAAGCAATTGGGTTGCTGGTGTTTTATCAAAAAGGATTGCACTTCCATCGAAAGAGGAGATGTTGGCAGATGTTAAGGCTTTTTATGCAGATCTTGAAGCTAATGGCAAGCCTAAGCATCGGACCCATGAGATGAGTGATTGTATGGTTCGAACTTTAAAGTTGCCGCCTATCGAGTTTCCCAGTATTATAGAGTTAGATCGTTGTCGTGTGAGATTAGCTAAGATCAACCACGTGTTGGAGCAGGCTAGCTTCTTTGCAGCTTTTGGGGTTGAGTACTTTAACTGGCTTGCTGCAACATGCGGCTGTCCAGCCTATGAAGAATGGAGAAAGGGAATGTACGATTACACACACGTTAACAAAAGGGCTAATCTCGGGTCGTACCGTGATGATTGGCATGACGACGAGTTGATTCATCAAGCTTACGAGGAGTTTAGGAAGTATACTACAAATGGAAGAAGTGAAGACCCAGCACATTTGAATGTTTGA 1515 47.79 MQHSSNSQSQPLTSRRVAVIGAGAGGLVSARELGREGHSVVVFERSSQIGGTWVYSPEIESDPLGVDPNRTRIHSSLYKSLRTNLPRELMGVRDYPFVPREGEGRDPRRFPSHLEVLKYLEDFANEFGICELVRFGTEVVSAGLVEIGKWRVRFRCESGDVDDEMFDAVVVCVGNYSQPRVAEIPGIDEWPGEQIHSHNYRDPEPFRGKVVILIGFSSSGTDISQELLVVAKEVHIACRSAKTGFLLAESVISKVSFHPMIKSARKDGTVVFEDGCVVSADVILHCTGYKYHFPFLETNGIVTVDDNRVGPLYKHVFPPALAPGLSFVGLPFKVVPLPMFELQSNWVAGVLSKRIALPSKEEMLADVKAFYADLEANGKPKHRTHEMSDCMVRTLKLPPIEFPSIIELDRCRVRLAKINHVLEQASFFAAFGVEYFNWLAATCGCPAYEEWRKGMYDYTHVNKRANLGSYRDDWHDDELIHQAYEEFRKYTTNGRSEDPAHLNV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4072539 4076342 - Carg21597-RA Car06g00685 150421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00685 504 Pfam Flavin-binding monooxygenase-like 251 369 IPR020946 GO:0004499|GO:0050660|GO:0050661
Car06g00685 504 Pfam Flavin-binding monooxygenase-like 15 240 IPR020946 GO:0004499|GO:0050660|GO:0050661
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00685 - - - cmos:111447804 921.768
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00749 Car-Chr1:4542584 Car06g00685 Car-Chr6:4072539 1.20E-133 dispersed
Car06g00685 Car-Chr6:4072539 Car19g00105 Car-Chr19:874949 1.24E-18 dispersed
Car16g00053 Car-Chr16:368109 Car06g00685 Car-Chr6:4072539 5.49E-07 dispersed
Car18g01223 Car-Chr18:11762766 Car06g00685 Car-Chr6:4072539 3.38E-06 dispersed
Car16g01008 Car-Chr16:8570435 Car06g00685 Car-Chr6:4072539 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g505 . . . . . Bpe07g00163 . . . Cmo16g01109 . . . . . Cpe14g00878 . . . . . . . . . . . . . . . . . . . . . . Cme06g02609 . . . . . . . Bma12g00154 . . . . Cma16g01059 Car06g00685 . . . . . . . . . . . . . . . . . . . Chy06g02022 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00685 Car_Chr06 FPKM 2.037307 0.88737 3.109237 3.508104 3.878996 3.222961 3.30391 5.569865 6.717204 5.401936