Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00709 ATGGAAGATCCTCTTCAGAGATTCCAGTTTCAGTCGTCGTCGTCGGACATGAAAGAAAAGAACTCGAAGAAGATGAAGCTCGGGAACGACGGCAAGCATCCGACATATCGCGGCGTCCGAATGCGGCAATGGGGAAAATGGGTATCAGAAATCAGAGAACCCAAGAAGAAATCCAGAATTTGGTTGGGTACATTTTCCACTCCCGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACCATCAAAGGTCATTCCGCTTACCTCAACTTCCCGGAGTTGGCTCACCGATTCCCCCGTCCCGCTAGCTCCTCCGCTAAGGACATTCGAGCGGCCGCCGCCAAAGCCGCGACGTTTCCCATTAATTCCACTGATGAAGACGACGACGATGCTGCCTCTCAATCCGACCGCAACCGCTCTCCCTCCTCTGTCGCCGCCGCCGCGAAATCTCCCGGAGAAATCGATGATCCGTTCTTCGATCTTCCCGATCTGTTTCTTCATCCCAATCACCAAATTGGTACATTCTGTTTCTCTCAAATGCTTCCGATTGACGGCTTCGACTCTGCTTTCGGCCGCCCGCCGTCGCCGTCGGAATATTTCGCCGCCACTCCTCCTTGA 618 54.37 MEDPLQRFQFQSSSSDMKEKNSKKMKLGNDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAAKAATFPINSTDEDDDDAASQSDRNRSPSSVAAAAKSPGEIDDPFFDLPDLFLHPNHQIGTFCFSQMLPIDGFDSAFGRPPSPSEYFAATPP 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4345591 4346208 - Carg25184-RA Car06g00709 150445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00709 205 MobiDBLite consensus disorder prediction 1 16 - -
Car06g00709 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 176 - -
Car06g00709 205 MobiDBLite consensus disorder prediction 118 153 - -
Car06g00709 205 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Car06g00709 205 MobiDBLite consensus disorder prediction 1 38 - -
Car06g00709 205 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Car06g00709 205 Pfam AP2 domain 34 85 IPR001471 GO:0003700|GO:0006355
Car06g00709 205 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Car06g00709 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 16 176 - -
Car06g00709 205 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Car06g00709 205 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Car06g00709 205 CDD AP2 36 94 IPR001471 GO:0003700|GO:0006355
Car06g00709 205 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Car06g00709 205 MobiDBLite consensus disorder prediction 17 37 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00709 Car-Chr6:4345591 Car12g01235 Car-Chr12:11712853 1.43E-44 dispersed
Car16g01062 Car-Chr16:9136091 Car06g00709 Car-Chr6:4345591 1.96E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3692 PF00847 AP2 4.30E-13 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00709 - - cmos:111449391 379.407