Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car06g00735 | ATGATGCAGGCGGATGAAAGCTGTGAGCTTTACAGATTCCTAGCCCAGAACAAAGGGTTCAGGCAGAGGGGCGGCTCCGGATCCTGCAGCTTTCCGGCGGCCCAAAGCTTGTCCACCGAGACAGCGCTTCCGTCGCCCCATGACAGAGCCCTGGCGGCGCTGAAGAATCACAAGGAAGCTGAGAAGCGTAGGAGAGAGAGAATCAACTCTCATCTTGATAAGCTTCGGACTCTTCTTCCATGTAATTCCAAGACCGACAAGGCATCGCTTTTGGCAAAAGTGGTAGAGCGAGTAAAAGAGCTGAAGCATCAGACCGCAGACATTGCGGAGCTGGAAACCTTCCCTTCCGAGAGCGACGAGATCAGCGTGCTCTCCGGCGAGGAATCGGACGACGGACGTCTCCTCTTCAAGGCCTCTCTTTGCTGCGAGGACAGGTCGGACCTCATCCCGGAGCTGAACGACATCCTGAATTCGCTGCAGCTGAAGACTGTGAGGGCCGACATCGTCACTGTGGGCGGCAGAATTCGCAATGTTCTTCTTATCGCCGCCAACCACCACCACAGCCTTGAGTCCCTCCACTTCCTTCAAAACGCTTTGAAATCTCTTCTTGAGCGTTCCAATTGTAGCGATAGATCCAAGAGGAGGCGTCTTGTAATTGCCCACAAATGA | 669 | 54.26 | MMQADESCELYRFLAQNKGFRQRGGSGSCSFPAAQSLSTETALPSPHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVERVKELKHQTADIAELETFPSESDEISVLSGEESDDGRLLFKASLCCEDRSDLIPELNDILNSLQLKTVRADIVTVGGRIRNVLLIAANHHHSLESLHFLQNALKSLLERSNCSDRSKRRRLVIAHK | 222 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 4866289 | 4867077 | + | Carg26069-RA | Car06g00735 | 150471 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car06g00735 | 222 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 52 | 101 | IPR011598 | GO:0046983 | |
| Car06g00735 | 222 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 4 | 218 | IPR045847 | GO:0003700|GO:0006355 | |
| Car06g00735 | 222 | Gene3D | - | 48 | 112 | IPR036638 | GO:0046983 | |
| Car06g00735 | 222 | SMART | finulus | 58 | 107 | IPR011598 | GO:0046983 | |
| Car06g00735 | 222 | CDD | bHLH_AtAIG1_like | 48 | 123 | - | - | |
| Car06g00735 | 222 | PANTHER | TRANSCRIPTION FACTOR BHLH106-RELATED | 4 | 218 | - | - | |
| Car06g00735 | 222 | Pfam | Helix-loop-helix DNA-binding domain | 56 | 101 | IPR011598 | GO:0046983 | |
| Car06g00735 | 222 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 56 | 110 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g01586 | Car-Chr4:9186384 | Car06g00735 | Car-Chr6:4866289 | 3.07E-51 | dispersed | |
| Car04g02786 | Car-Chr4:21337069 | Car06g00735 | Car-Chr6:4866289 | 3.01E-37 | dispersed | |
| Car05g00495 | Car-Chr5:2869149 | Car06g00735 | Car-Chr6:4866289 | 6.05E-32 | dispersed | |
| Car06g00735 | Car-Chr6:4866289 | Car18g00972 | Car-Chr18:10270636 | 1.08E-39 | dispersed | |
| Car07g00503 | Car-Chr7:2516523 | Car06g00735 | Car-Chr6:4866289 | 2.36E-22 | dispersed | |
| Car06g00735 | Car-Chr6:4866289 | Car04g01966 | Car-Chr4:13795642 | 1.29E-48 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3697 | PF00010 | HLH | 3.20E-12 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car06g00735 | - | K22484 | csv:101220675 | 322.783 |