Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00748 ATGGCTTCCTCGTCATCTGATCCTGCCTTCAAACACGAACCCGGTGCTTCTTGCGCTGCTGCTGCTGGAGGAGGAACGCCGGAGTCTTCCGAGGTTGTAATGGCGAACGATCAGCTTTTACTTTACAGAGGATTCAAGAAAGCCAAGAAAGAACGAGGTTGCACTGCCAAAGAGCGCATCAGTAAAATGCCTCCATGTGCTGCTGGGAAAAGGAGTTCCATATACCGCGGAGTCACTAGCGTCTATGAATGGTTTGATGATATTAGACATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAAAGTACCTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGGAGCATATGATGAAGAAGAGGCAGCTGCTAGGGCATACGATTTGGCAGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACTAGGGACCTTGAAGAAATGCAGACTGTTTCAAGAGAGGAATATCTTGCGTCTCTAAGAAGAAAGAGCAGTGGATTCTCCAGGGGAATATCTAAATATCGTGGTCTCTCGAGGTTTTTTCCCCCTCACTAA 582 46.05 MASSSSDPAFKHEPGASCAAAAGGGTPESSEVVMANDQLLLYRGFKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTSVYEWFDDIRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQTVSREEYLASLRRKSSGFSRGISKYRGLSRFFPPH 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5168799 5170715 - Carg26082-RA Car06g00748 150484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00748 193 ProSiteProfiles AP2/ERF domain profile. 74 146 IPR001471 GO:0003700|GO:0006355
Car06g00748 193 Pfam AP2 domain 89 138 IPR001471 GO:0003700|GO:0006355
Car06g00748 193 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00748 Car-Chr6:5168799 Car11g00872 Car-Chr11:5425205 7.86E-55 dispersed
Car06g00748 Car-Chr6:5168799 Car04g01517 Car-Chr4:8812436 1.16E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3699 PF00847 AP2 1.40E-06 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00748 K09285 - cpep:111786705 343.584