Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00752 ATGGCTGATGCTGATCACCAATTCCCTCGCCGGAAAGACCTTGGCAAACGTACCTCCTCCGCTGCCAACACCGACACCACCTCCGCCACCCCTACCGACATCGGGGCTGCCACTGCTCCCTGTGGTGCCTGCAAGTTTCTCCGTAGAAAATGCGTCAATGGCTGCATCTTTGCACCGCATTTCGCCTCCGATCAGGGCGTTGCTCGCTTTGCCGCCGTGCATAAGGTGTTTGGAGCAAGTAATGTATCAAAGCTGCTGCTTCATATTCCGCTCAGTCGCCGAAACGACGCCGTCGTTACCATTTCTTATGAAGCTCAGGCTAGACTCTCCGACCCTGTCTATGGCTGTGTCTCAACTGTACTTGCCCTTCAACAACAGGTGGCATCTCTGCAGGCGGAGCTTGCGGCGGTTCAAAGTCAATTAATAAGCAGCAGGTTGGCATTTGCAAGTGCAATTCAGAACTCACAGCCACCGCAAGTGGGAGTGCAGCTGCAGCCCGCATACTCCAACAACTCCTCCATCTCTGTCTCAGCCTCCACCTCCGCTCATAATGCAATCAATTTGAGCAGTTTTGCTTCCAATTACGACCTTCCGACGGAGACTGCCCCATCTCCCCATCACTTAGAGCCTCTCCATCTCCCCCGCCGATCCATCGAAGACGAGGAAGACGAGGAAAATAGCCAGCTCCCCACCATCTTCGCCGACGACCTACTCCGCCCACGATGA 726 54.96 MADADHQFPRRKDLGKRTSSAANTDTTSATPTDIGAATAPCGACKFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRPR 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5204724 5205932 - Carg26086-RA Car06g00752 150488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00752 241 MobiDBLite consensus disorder prediction 217 241 - -
Car06g00752 241 Pfam Lateral organ boundaries (LOB) domain 40 138 IPR004883 -
Car06g00752 241 ProSiteProfiles LOB domain profile. 39 141 IPR004883 -
Car06g00752 241 MobiDBLite consensus disorder prediction 1 18 - -
Car06g00752 241 Coils Coil 120 140 - -
Car06g00752 241 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00752 Car-Chr6:5204724 Car17g00028 Car-Chr17:122751 5.52E-53 dispersed
Car06g00752 Car-Chr6:5204724 Car08g00835 Car-Chr8:5589206 5.89E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3700 PF03195 LOB 6.50E-37 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00752 - - cmax:111471914 429.483