Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car06g00779 | ATGGAAGGATCACAAAGATCAGAGCTTCCCAATTATCAACTTCAAGTCTCCTTCCTCTCAAATGCACCGCACCCTCAGCCCATCCACGAAATGGGGTTTCTCCATTTTGAAGACCACAATCAGGTTTTGAGCTTCTTGGCACCTAATAACAACGCCGCCACAACCACTACTGCACCACCCACCACCACCGACACCACCACCACCACCACCACCGCCATGCCTTCTGCCTTCACTACCCCTCCTCACGCGCACCTCCTTACTAGACCCTCTTGGAGCAACGACCAGGTGGGAACACTAGATCCAAAGCCCGGTGGCGATGAAAACTGCACTGGTAGCACCAGCGACGGCACCAATTCATGGTGGAGAAACTCCAACGCAGATAAGACCAAAGTTAAGGTCAGGAGAAAGCTGAGAGAACCGCGTTTCTGTTTCCAAACGAGAAGCGATGTCGATGTCCTCGACGACGGCTACAAATGGAGAAAATACGGCCAAAAAGTCGTCAAAAACAGTCTTCATCCACGAAGCTACTACCGTTGCACGCATAGCAACTGCCGTGTCAAGAAGAGGGTGGAGCGGCTGTCGGAGGATTGCCGGATGGTCATAACTACATACGAAGGTAGACACAATCACTCCCCTTGCGACGACTCCAATTCTTCCGACCATGAACCCTTTACCTCCTTCTGA | 684 | 51.75 | MEGSQRSELPNYQLQVSFLSNAPHPQPIHEMGFLHFEDHNQVLSFLAPNNNAATTTTAPPTTTDTTTTTTTAMPSAFTTPPHAHLLTRPSWSNDQVGTLDPKPGGDENCTGSTSDGTNSWWRNSNADKTKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSDHEPFTSF | 227 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 6012452 | 6013909 | + | Carg25067-RA | Car06g00779 | 150515 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car06g00779 | 227 | Pfam | WRKY DNA -binding domain | 154 | 210 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Car06g00779 | 227 | ProSiteProfiles | WRKY domain profile. | 148 | 210 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Car06g00779 | 227 | MobiDBLite | consensus disorder prediction | 73 | 123 | - | - | |
| Car06g00779 | 227 | MobiDBLite | consensus disorder prediction | 208 | 227 | - | - | |
| Car06g00779 | 227 | MobiDBLite | consensus disorder prediction | 107 | 123 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car02g00417 | Car-Chr2:3278398 | Car06g00779 | Car-Chr6:6012452 | 1.21E-13 | dispersed | |
| Car06g00779 | Car-Chr6:6012452 | Car12g00609 | Car-Chr12:4142433 | 2.53E-131 | dispersed | |
| Car14g01287 | Car-Chr14:10973869 | Car06g00779 | Car-Chr6:6012452 | 8.78E-34 | dispersed | |
| Car06g00779 | Car-Chr6:6012452 | Car03g00946 | Car-Chr3:7357790 | 3.37E-49 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3710 | PF03106 | WRKY | 1.40E-24 | CL0274 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car06g00779 | - | - | cmax:111472906 | 417.542 |