Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00798 ATGGGTAAGAAGGGAGGCTCCTCCTGGTTGACTGCTGTCAAAAGGGCTTTTAGATCTCCTTCCAAGGATGAAGACGACAAGAAAAGAGAGAAGCGGAGATGGATTTTCAGGCGATCCACCAATCTACACGACACGGATACTCACCAAACGCCATTGGCTACGGAACATGCATCTTCCGAGGCAGCGCTTGCGGTTGCGGTGGCTACTGCTGAAGCTGCTGTCGCCACTGCTCAAGCGGCTGTGGAGATTGCTCGCCTACCTACTCGGCCTTCCAATCACGCTAGATATCACTATGCTGCGATTGTTATTCAGACCGCTTTTAGAGGATACTTGGCAAGGAGGGCTCTGCGTGCGCTGAAGGGGTTGGTGAAGTTGCAGGCTTTGGTGAGGGGTCACAACGTGAGAAAACAGGCGAAGATGACCCTTCGATGCATGCAAGCTCTGGTTCGAGTGCAAGCCCGTGTGCTCGATCAGCGGATGAGACTCTCCCATGACGGCAGTAGAAAATCCACCTTCAGCGACACAAATAGCGTCCTTGGATCGCGTTATCTCCAAAACTTCTCCGATAGAAAATCCGTTTCTCAGTCAAGGGAGGGAAGTAGCACTGTCACAGACGATTGGGATGAACGGCCCCACTCTGTTGAAGAAGTGAAAGCTATGCTTCAACATAGAAAAGAGATCGCCATGAAGCGTGATCGAAATCTCTCCCACGCCTTCTCTCAACAGATATGGCGGAGAGGTCGAAGTCCATCCATGGGAAGCGGAGATGATCTAGAAGAAAGACCCAAATGGCTGGATCAATGGAATTCAAGGAAGCCATTGGAAAACAGGGGAAGAGCTTCAACGGATCAAAGAGACCCCATAAAAACAGTCGAAATCGACACCTTCCAGCCCTACTCTCACCGGAGAACGGTTCAGAATCAACAAAGAACAAATCCACATTCCGGCAGCTCGCCACTCCACCGGTCGCAACAAAACATACCCTGTTTCCACCACTCACCAGCCACACCGTCCCCATCTAAAACACGGCCTCTGCTAGTCCGGTCCGCAAGCCCACGTATCATCAGAGACGACAAAAGCGAAAACACATCCCAAACACCAAGCTTAAGGTCAAACTACTACTACAGTGGCAATTTACTTCAACAAAGTAGAACAGCAGCAAGTAGCAGCTATAGCCAAGGCAATTGTTTGCCGAATTACATGGCAGCCACAGAGTCCGCAAAGGCACGATTACGGTCACATAGCGCGCCAAGACAACGGCCATCAACGCCGGAGAGGGAGAGAGGAGTTGGGTCAGCAAAAAAACGGCTATCATTCCCAGTTCCGGATCCAAATGGGTATGGCGTTTACGAGCGAAATTTGAAAAGTCCAAGCTTCAAGAGCGTAAGTGGTACGTACTTTGGGATGGAGCAGCAATCAAATTACTCATCTTGCTGCACCGACAGCCTCGGCGGAGAGATTTCCCCTTCTTCAACGACGGATCTAAGAAGATGGCTAAGGTGA 1503 50.57 MGKKGGSSWLTAVKRAFRSPSKDEDDKKREKRRWIFRRSTNLHDTDTHQTPLATEHASSEAALAVAVATAEAAVATAQAAVEIARLPTRPSNHARYHYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHDGSRKSTFSDTNSVLGSRYLQNFSDRKSVSQSREGSSTVTDDWDERPHSVEEVKAMLQHRKEIAMKRDRNLSHAFSQQIWRRGRSPSMGSGDDLEERPKWLDQWNSRKPLENRGRASTDQRDPIKTVEIDTFQPYSHRRTVQNQQRTNPHSGSSPLHRSQQNIPCFHHSPATPSPSKTRPLLVRSASPRIIRDDKSENTSQTPSLRSNYYYSGNLLQQSRTAASSSYSQGNCLPNYMAATESAKARLRSHSAPRQRPSTPERERGVGSAKKRLSFPVPDPNGYGVYERNLKSPSFKSVSGTYFGMEQQSNYSSCCTDSLGGEISPSSTTDLRRWLR 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6155668 6157931 - Carg24186-RA Car06g00798 150534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00798 500 MobiDBLite consensus disorder prediction 1 30 - -
Car06g00798 500 MobiDBLite consensus disorder prediction 407 447 - -
Car06g00798 500 MobiDBLite consensus disorder prediction 297 345 - -
Car06g00798 500 Pfam IQ calmodulin-binding motif 123 139 IPR000048 GO:0005515
Car06g00798 500 Pfam IQ calmodulin-binding motif 99 117 IPR000048 GO:0005515
Car06g00798 500 MobiDBLite consensus disorder prediction 419 433 - -
Car06g00798 500 Pfam Protein of unknown function (DUF4005) 351 450 IPR025064 -
Car06g00798 500 MobiDBLite consensus disorder prediction 190 211 - -
Car06g00798 500 MobiDBLite consensus disorder prediction 480 500 - -
Car06g00798 500 MobiDBLite consensus disorder prediction 241 371 - -
Car06g00798 500 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Car06g00798 500 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Car06g00798 500 MobiDBLite consensus disorder prediction 252 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00798 - - - csv:101221270 676.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00798 Car-Chr6:6155668 Car17g00469 Car-Chr17:3354633 4.12E-179 dispersed
Car06g00798 Car-Chr6:6155668 Car15g00406 Car-Chr15:2112389 3.46E-42 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car06g00308 CCT,ECH 9 187 IQD Protein Family AT3G09710 57.5 3.0e-50 196.8
Car04g01432 CCT,CST,ECH 84 236 IQD Protein Family AT3G09710 53.9 3.7e-40 163.3
Car04g02506 CCT,CST,ECH 1 282 IQD Protein Family AT5G03040 52.6 2.5e-65 246.9
Car06g00308 CCT,ECH 3 187 IQD Protein Family AT5G03040 63.8 8.6e-58 221.9
Car15g00406 CCT,CST,ECH 1 467 IQD Protein Family AT3G52290 53.0 5.5e-99 358.6
Car04g02506 CCT,CST,ECH 1 285 IQD Protein Family AT3G52290 66.7 6.5e-84 308.5
Car06g00308 CCT,ECH 8 187 IQD Protein Family AT3G52290 55.6 2.9e-47 186.8
Car03g01126 CCT,CST,ECH 95 284 IQD Protein Family AT2G26410 50.3 5.6e-37 152.9
Car11g00811 . 1 412 IQD Protein Family AT3G22190 57.2 1.2e-95 347.4
Car10g00782 . 23 333 IQD Protein Family AT3G22190 50.1 8.1e-63 238.4
Car01g01342 . 1 434 IQD Protein Family AT2G26180 59.7 4.0e-115 412.1
Car09g00291 . 1 438 IQD Protein Family AT2G26180 58.4 8.4e-113 404.4
Car16g00380 . 40 223 IQD Protein Family AT2G33990 52.9 2.1e-48 189.9
Car16g00380 . 43 216 IQD Protein Family AT3G15050 61.6 1.6e-53 206.8
Car06g00798 . 1 500 IQD Protein Family AT4G00820 55.7 3.5e-127 452.6
Car06g00798 . 1 500 IQD Protein Family AT1G01110 52.4 1.8e-123 440.3
Car08g00629 CCT,CST,ECH 1 397 IQD Protein Family AT3G16490 52.6 9.4e-74 274.6
Car10g00607 CST 1 376 IQD Protein Family AT3G16490 52.8 2.7e-68 256.5
Car11g00535 CST 1 382 IQD Protein Family AT3G16490 51.4 4.5e-68 255.8
Car17g00704 CCT,CST,ECH 1 389 IQD Protein Family AT3G16490 50.5 2.3e-67 253.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00798 Car_Chr06 FPKM 24.309683 24.53513 42.66946 43.655682 13.675882 12.028814 13.616987 24.885933 25.569777 22.946058