Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00825 ATGAGCGGGAGCGACGACGAGTTATGTCTCAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCGAGTTTCATCCACAGGCCTTCCAACTCCATGATTAATCACCTCCGTAGGAGCTCTTGGAAAGATGCGTTTCAAGTTTCTGATCGAAACGTCGATTCGAGGTCGTTTCTTAGGGGAATCGATGTGAATAGGCTGAGGACGGCGGTGGATGGCGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGGTTTCTAGTATCAGCGGAAAGAGGAGCGAGAGAGAAGCCGTTGGAGATGAGGCGGAGGCCGAGAGAACCTCGTGCTCGCGAGGGAGCGACGATGAAGACGGCGGCGATGGTGACGGCGACGCCTCGAGAAAGAAGCTCAGGTTATCGAAGGAACAGTCGTTGGTTCTTGAGGAGACGTTCAAAGAGCACAACACGCTCAATCCAGTAAGTGGCAATCTGGTCATTTCATACGATTCTTCTCTTCACGTAGCGTTAATGATTAGTGGCAATTTTGAAGCAAAAGCTGGCTCTTGCAAAACGGCTGAATCTGAGACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGTGAGTAAATTAATTCCGTATCCAGGGGTAGAATCGACCAAGTTGAAGCAGACAGAAGTGGATTGTGAGTACTTGAGGAGGTGCTGTGAGAATCTAACAGAGGAAAACAGAAGGCTACAGAAGGAGGTGCAAGAGTTGAGGGCACTCAAGCTTTCTCCGCAGCTCTATATGCACATGAACCCTCCTACCACTCTCACTATGTGCCCGCAGTGTGAGCGTGTGGCGGTTTCCTCGTTCTCGTCAACATCAGCTGCTTCGACTCGCCATCCAGTTGCAGCTGGTATGCAGCAGCGGTCCTCAATGCCCATCGCCCCGCAGGCGGTGTTGCCGATCCAACGTTGA 948 51.37 MSGSDDELCLSLSLGFGVTTQPSFIHRPSNSMINHLRRSSWKDAFQVSDRNVDSRSFLRGIDVNRLRTAVDGEEENGVSSPNSTVSSISGKRSEREAVGDEAEAERTSCSRGSDDEDGGDGDGDASRKKLRLSKEQSLVLEETFKEHNTLNPVSGNLVISYDSSLHVALMISGNFEAKAGSCKTAESETKTSGGVVSKQKGKVSKLIPYPGVESTKLKQTEVDCEYLRRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSFSSTSAASTRHPVAAGMQQRSSMPIAPQAVLPIQR 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6386012 6387604 + Carg24158-RA Car06g00825 150561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00825 315 Coils Coil 224 254 - -
Car06g00825 315 Pfam Homeobox associated leucine zipper 218 252 IPR003106 GO:0006355|GO:0043565
Car06g00825 315 MobiDBLite consensus disorder prediction 93 129 - -
Car06g00825 315 Pfam HD-ZIP protein N terminus 1 96 IPR006712 GO:0005634
Car06g00825 315 MobiDBLite consensus disorder prediction 75 91 - -
Car06g00825 315 MobiDBLite consensus disorder prediction 71 129 - -
Car06g00825 315 MobiDBLite consensus disorder prediction 284 315 - -
Car06g00825 315 MobiDBLite consensus disorder prediction 284 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00825 Car-Chr6:6386012 Car16g01059 Car-Chr16:9103007 1.20E-74 dispersed
Car12g00635 Car-Chr12:4282596 Car06g00825 Car-Chr6:6386012 4.84E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00825 K09338 - csv:101222132 339.347