Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00858 ATGGATTTCTCACATACCTTTCTCCTCTTCTTCCTCTTCATCCTCCCCACTTTATCCACAGCTCAAAGTTGCTCTATTTCCAAGTGTATGAAGGACAACTTCGGCATCCGATTCCCATTCCGAATTCCCGAGCTGCAACCTGCAAGATGTGGCTATCCTGGTTTCAACTTAGCCTGCAACGACGCGGGCATGTCGACTCTAAATCTATCACCTTCAGAACAATTTTTGGTAAGAAATATTGATTATGTTGCTCAACAGATACAGCTCTATGATCCAGATGTTTGCCTTCCTAAAAGGCTTCTTCTTCAAGGCTTCAACTTCAACCTCTCAAATTCTCCATTTCTGCTCCCTTTTAGTAAGAATTTCACCTTCCTAAGCTGTCTACCTCAATTTGCAACATCCCGATTTCCTGTCCTTAGCTGCCTTAGCAACTCCACCAGCTCGGTTGTGGCTACTTCCTCCATGAGTTATGTCAGGTCAATGTCAAAGTCAAACTCTTGCAAGATCATAGCTAATTTAACTGTCCCAGTTGCGTACCCAGATGAGGCCAATCAGTTTCTAACCGACCACTATGGTGATCTCCTGCTAACTTGGAATAGCCCTGCTTGCAGTATCTGCGAAACAGAAGGCAGGCTTTGTGGGTTCAAAAGCAACAGCGGCCTCGGCATTGCCTGTTTCAATAAGTACTCAACAGGGGAGAATAATGGTCTCAGAATATTGCGGATCATCTGTGTGGTGATTATTCTACCGAGTTTGATGTGTGTCTTTGGATTTGGCTGCTTCATCTGCTTCGCAAGGTGGGGCTATGGCATTGCAGACAGCAGAAGAAACCAAGCTCAGAATCAGCAGCAGGTCAATCCAGCTTTAGAGACAGAGCCACCGATCCGTTTGAGTGGTCTGGACGAATCAACCATTGATTCATATCAGAAGGTAATCCTTGGAGAAAGCCGGCGGCTGCCAGGCCCCAATGGCACCACCTGCCCCATATGCCTCGGAGAGTACTTAACTAAAGACACGGTCAGATGCATTCCTGAGTGCAAGCATTGCTTCCATGTGGATTGTATTGATCAATGGCTTCGTGTCAACAGCAGCTGCCCTCTTTGTCGAAACTCTCCCTCTCCCTCCCCTTCTCACTAA 1137 46.61 MDFSHTFLLFFLFILPTLSTAQSCSISKCMKDNFGIRFPFRIPELQPARCGYPGFNLACNDAGMSTLNLSPSEQFLVRNIDYVAQQIQLYDPDVCLPKRLLLQGFNFNLSNSPFLLPFSKNFTFLSCLPQFATSRFPVLSCLSNSTSSVVATSSMSYVRSMSKSNSCKIIANLTVPVAYPDEANQFLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQNQQQVNPALETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPSPSPSH 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6703989 6706348 + Carg20892-RA Car06g00858 150594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00858 378 Pfam Ring finger domain 326 369 IPR001841 -
Car06g00858 378 Pfam Wall-associated receptor kinase galacturonan-binding 24 91 IPR025287 GO:0030247
Car06g00858 378 ProSiteProfiles Zinc finger RING-type profile. 327 369 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00858 - - - mcha:111016421 558.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00858 Car-Chr6:6703989 Car16g00486 Car-Chr16:3110936 1.18E-65 dispersed
Car16g00054 Car-Chr16:373219 Car06g00858 Car-Chr6:6703989 6.21E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g133 Blo02g01150 . Bda06g00147 . Bpe05g00694 Bpe07g00071 . . Cmo06g01042 Cmo16g00596 . . . . . Cpe14g00461 . . . . . . . . . . . . . . . Cone8ag0244 . . . . . . . . . . . . . . Bma12g00608 . . . . Cma16g00544 Car06g00858 . . . . . . . . . . . . . . . . . . Csa04g00658 Chy07g01153 .
Vvi15g727 . . . Bda08g00465 . . . . . . Cma06g01059 . Car06g00858 . Sed02g1748 Cpe08g00590 . Bhi01g00472 Tan10g0126 Cmetu06g1435 . Hepe05g2020 . Lcy11g2045 Cla05g00098 Cam05g0105 Cec05g0101 Cco05g0107 Clacu05g0094 Cmu05g0094 Cre05g0161 . . . . Lsi05g02120 . . Cme06g00101 Blo02g00328 . . . . . Bma02g01099 . . Cmo06g01042 . . . . . . . . . . . . . . . . . . . . . . Csa03g00809 Chy06g00101 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012559 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00858 Car_Chr06 FPKM 7.773054 9.233967 15.178972 17.891476 63.674782 51.536446 63.60305 16.428066 15.788555 15.779921