Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00862 ATGAACGACGACGATCCATGTGGAGTTATGGACGCTCAGTACATACGCAGGCATCACCGTCACCATCCCAAAGAGAATCAGTGTACATCGGTTGTTTTCAAGAACGTCAGAGCTCCGGTTCCTCTTGTGAGTTGTTCTTCCGATCCGAAATCCTACTGTTCTTTTCATTTTGTCAACGCTCCAGCTCCTGTGCTCTGGATTGATTTTTCTGATGTTTTATGGGGATCGTGGAGTTTGTTTCCATTGCCTCATTTAGTTCTTGAGCTTTACCCTTCTTGTTGTTTAATAATCGTTGGAATTATGGAAGGTTTTGTTGAATTGTTCTTATCTGATTTTGTAATGATTCAATTGGTTACATTATATCAGGTTTGGTCACTGGTGAGGCGATTTGATCAGCCCCAGAAGTATAAGCCTTTTGTTAGTCGTTGTGTAGTGAAAGGAGATCTGGGCATTGGAAGTGTCAGGGAAGTGAATGTGAAATCTGGTCTTCCTGCGACCACCAGTACTGAGAGGTTGGAGCTTCTCGACGATGAAGAACACATACTCGGAATCAGAATCGTTGGTGGAGATCACAGGCTCAAAAACTACTCTTCCATCATGACTGTCCATCCAAAGGTCATTGATGGAAGACCTGGCACGGTTGTAGTCGAGTCTTTTGTGGTGGATGTGCCTAGCGGGAACACCAAAGATGAGACGTGTTATTTCGTTAAGGCATTAATCAGATGCAATCTTAAATCATTGGCGGATGTATCGGAGAGGATGGCTGTGCAGGGGCAAACTGAACCAATCGAGAAGTAG 798 44.11 MNDDDPCGVMDAQYIRRHHRHHPKENQCTSVVFKNVRAPVPLVSCSSDPKSYCSFHFVNAPAPVLWIDFSDVLWGSWSLFPLPHLVLELYPSCCLIIVGIMEGFVELFLSDFVMIQLVTLYQVWSLVRRFDQPQKYKPFVSRCVVKGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIRIVGGDHRLKNYSSIMTVHPKVIDGRPGTVVVESFVVDVPSGNTKDETCYFVKALIRCNLKSLADVSERMAVQGQTEPIEK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6730178 6731433 + Carg20888-RA Car06g00862 150598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00862 265 Pfam Polyketide cyclase / dehydrase and lipid transport 115 252 IPR019587 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00862 K14496 PYL; abscisic acid receptor PYR/PYL family - csv:101211059 281.952
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00862 Car14g01906 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00862 Car-Chr6:6730178 Car15g00965 Car-Chr15:7118175 2.49E-85 dispersed
Car14g01906 Car-Chr14:14644730 Car06g00862 Car-Chr6:6730178 2.30E-23 wgd
Car16g00060 Car-Chr16:400213 Car06g00862 Car-Chr6:6730178 8.92E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g124 . . . . . . . . Cmo06g01046 . . . . . . . Cpe05g00609 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g01134 Cmo15g01095 . . Car06g00862 . . . . . . . . . . . . . . . . . . . . .
Vvi15g739 . . . . . . . . Cmo08g00128 . Cma06g01053 Cma14g02101 Car06g00862 Car14g01906 . Cpe08g00587 Cpe03g01784 Bhi01g00464 Tan10g0134 . . Hepe05g2015 . Lcy11g2041 Cla05g00105 Cam05g0114 Cec05g0111 Cco05g0118 Clacu05g0106 Cmu05g0105 Cre05g0169 Cone14ag0029 Cone15ag0031 Cone11ag0486 Cone18ag1019 Lsi05g02112 . . Cme06g00106 Blo02g00330 . Bda11g00214 Bda13g00382 Bpe13g00982 . Bma02g01095 Bma06g01158 . Cmo06g01046 Cmo14g02166 Cma08g00120 . . . Cpe17g01026 . . . . . . . . . . . . . . . . Csa03g00814 Chy06g00106 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000330 3 6 1 3 1 4 8 4 4 4 3 4 8 4 5 7 4 10 8 4 4 4 3 4 4 3 3 8 6 3 137
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00862 Car_Chr06 FPKM 11.705761 11.8058 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0