Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00867 ATGTCGGGTTCCTCCAAATTGCGACTGGTTCGATGCCCCAAGTGTGAGAATCTTCTCCCGGAGCTCGCTGATTATTCTGTTTATCAGTGCGGTGGATGTGGTACCATTCTACGAGCGAAAATTAGAAATCAGGAAGAAGACTCTGTGTCTGATAAGTCGGATGAAGACAGGGTTGGAGGGTTGTCTACTAAATCCACTACTTCTCCTGAAAAAGGGACGGTTGATCTTAGTGATGATGCCTCTGATGTGGATTTAAAGGCGAGTCCTGATTCTTTGCCTTGTGATCTTAAGGGCTCAGAGATGGATAAAGTGGAAGGTGCTGAGAAGGATGTTAACTTGAATATGGATAAAAATGGCTTGAGTGATTTGATGGGAACGGAACAAGTGGATTTGAATGTTCAGATGAACATGATGAAGCTTGGATCAGGAAGAGAATTGGATTGGAAAAGGGGAGAGACAGGTGAGATGGGAGATGGGGTTGAGAAGAATTCAAGGGGTAATGTGAAAAGTGTGAGGTTCTCAACTCTGAACCACGAAGACGATCAAACGAATCGTCAATTGGAGTTCATGTCTGGTGTGCAGGAGCTTTTAACGAGTCGTGGCAATGCCAATGGAGCTGATAAAGTTAAGCACCTCGAACAGGACCGACTCGAGCTTCTGAGGAAGCTGGACGAGTTGAAGGAACAACTTGGTCAGTCTTGGCCAGTCCCTGCCGATGGTGGAATGAAACCTCCTAAACCTTTGAATCACTCTGGTGCTTGGCCTATGGATGGTTCTTCAGGATCAAAGTATGTTGCAGGCTCTTCATTTTCCAACCATTGTTCAGAACCATTTCCTGTTGCCAATGGAATTGAGATGCCTGTCCAAAGCTATTATCCAAACAATACATCTCATTTTGGTGACCCTTTTGGATCGCAAATGCTTAGACGAAACTCCTGCCAGTTTTCGTGTGCGCATCAACAGCACCCTCACCAATATCATTCTGGCCATTATGTCGATACCAGTTTGGATTCGTTCAATCACTACCCTCCAAATCCTCCCTTTCATCAGCCTTCTTGCTCTTGTTTCCAGTGCCAAAATAGATACTCACAGGTTCCATCCTCACTACCTGGTAGTGCTTACTTCAATAGAAGGTTTCCTGATGTTCCCAACAATCCCTCACTATATTCTCATGAGAACACTGCTGCTTATGGGGCATGTGTTAATAATATTAGAACCACTAATCCTCCCGTAAATCTTCGTGATCGACAATCACAATCACGATGGCCAACTGACTTCAATTCTGAGATTGGTGGCGTCCTTGGCAATCGTCCTCGGAGGACAGTCTTAGTGAGTGGTGGCCGTAATTGCCATCCAATTGCTGGTGGTGCTCCATTTCTAACATGTAACAATTGCTTTGAAATGCTACAACTTCCTAAGAAGCTTATGATGGTTAAGAATCAGCAAAGTGTTCGTTGTGGAGCTTGTTCTACGTTGATCAATTTTACGGTTATCGACAAGAGGCTTGTTTTCTCCAATCATTCACGGGGAGGTCGATTTCCCTCAGAGGTTGATGATAGTGATGAACTGGCTGTCAGAGATTATAATTCAAATTTTGGTCACTTGAACCGGACTAATTTCTCTTCTGATGATTATGATAACAACACCACTCTTTACGATTTCGAGTCACTAGATAGAGAGCCTGTGCTACAGCCCATCGGTACAGGTTTAAGCTCAAATAAGCAACAAGAGATGCCAAGTTTTCATCCTACATCTTCAAGCACCTCAGAGGATGAAGACAGTCCAGATCTTTCAACTGCTCCAAGGGAGGCTACAAACAATTTACACAATTTAATCAAGACGACACGCTCTCCTCCCCTTCCAGGCTCACCGCTTCAGTCATACTTCGATTACTCGTCTAATAACCAGACTGCAAACAGGTTTACCAAGGGAAATCGAAGTAGCCGTTCAGATCAGGAGAATGTGAAACCAAATAAGGTTAACTCGCGACAAAACTCTTTGAAAGAAGCATCACTGGCAACTGAGATGGATGTGTCGATGAACGACTACTCTGATACCGTGGCGTTTCCAGAGACAAAGGATGCAAGTAAAGAAGATAACCAGCCAAGAGCTAGTAAAGGAGGGGAGTCTTTTTTTGCAAACATTATCAAGAAGAGTTTTAGATCTAATCAAGTCGACGATCGGAGCAGAAGTAATGTTTCAGTTAATGGACAGTTTATATCGTATCGTATGGTTAAGAAAGCTGAAAAGCGCGCTGGACCGATCCATCCCGGAAAATACTGGTACGATTCCCGGGCTGGATTCTGGGGCGTCATGGGCGGACCTTGTCTTGGCATAATCCCCCCGTACATTGAGGAATTTGACTACCCCATGCCAGAGAATTGTGCAGGAGGAAATACTGGTGTTTTTGTGAATGGCAGAGAGCTTCACCTAAAGGATTTGGATTTGCTTGCTGGTAGAGGGCTGCCCACTTCAAGGGACAGATCTTACATTATCGAGATCTCTGGCCGAGTTCTCGACGAGGACACCGGTGAAGAGCTCGAAGGCCTCGGAAAACTTGCTCCAACAGTTGAGAAGGTAAAGCATGGATTTGGCATGAAAGTTCCAAGAACAGCTTCTTAA 2622 44.66 MSGSSKLRLVRCPKCENLLPELADYSVYQCGGCGTILRAKIRNQEEDSVSDKSDEDRVGGLSTKSTTSPEKGTVDLSDDASDVDLKASPDSLPCDLKGSEMDKVEGAEKDVNLNMDKNGLSDLMGTEQVDLNVQMNMMKLGSGRELDWKRGETGEMGDGVEKNSRGNVKSVRFSTLNHEDDQTNRQLEFMSGVQELLTSRGNANGADKVKHLEQDRLELLRKLDELKEQLGQSWPVPADGGMKPPKPLNHSGAWPMDGSSGSKYVAGSSFSNHCSEPFPVANGIEMPVQSYYPNNTSHFGDPFGSQMLRRNSCQFSCAHQQHPHQYHSGHYVDTSLDSFNHYPPNPPFHQPSCSCFQCQNRYSQVPSSLPGSAYFNRRFPDVPNNPSLYSHENTAAYGACVNNIRTTNPPVNLRDRQSQSRWPTDFNSEIGGVLGNRPRRTVLVSGGRNCHPIAGGAPFLTCNNCFEMLQLPKKLMMVKNQQSVRCGACSTLINFTVIDKRLVFSNHSRGGRFPSEVDDSDELAVRDYNSNFGHLNRTNFSSDDYDNNTTLYDFESLDREPVLQPIGTGLSSNKQQEMPSFHPTSSSTSEDEDSPDLSTAPREATNNLHNLIKTTRSPPLPGSPLQSYFDYSSNNQTANRFTKGNRSSRSDQENVKPNKVNSRQNSLKEASLATEMDVSMNDYSDTVAFPETKDASKEDNQPRASKGGESFFANIIKKSFRSNQVDDRSRSNVSVNGQFISYRMVKKAEKRAGPIHPGKYWYDSRAGFWGVMGGPCLGIIPPYIEEFDYPMPENCAGGNTGVFVNGRELHLKDLDLLAGRGLPTSRDRSYIIEISGRVLDEDTGEELEGLGKLAPTVEKVKHGFGMKVPRTAS 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6774265 6778580 - Carg20883-RA Car06g00867 150603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00867 873 MobiDBLite consensus disorder prediction 44 59 - -
Car06g00867 873 MobiDBLite consensus disorder prediction 232 255 - -
Car06g00867 873 MobiDBLite consensus disorder prediction 563 670 - -
Car06g00867 873 MobiDBLite consensus disorder prediction 44 98 - -
Car06g00867 873 MobiDBLite consensus disorder prediction 566 645 - -
Car06g00867 873 Coils Coil 209 229 - -
Car06g00867 873 Pfam Probable zinc-ribbon domain 454 497 IPR021480 -
Car06g00867 873 MobiDBLite consensus disorder prediction 60 74 - -
Car06g00867 873 MobiDBLite consensus disorder prediction 654 670 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00867 - - - bhj:120083633 1414.82
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00867 Car14g01899 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00648 Car-Chr4:3703306 Car06g00867 Car-Chr6:6774265 3.45E-13 dispersed
Car06g00867 Car-Chr6:6774265 Car16g00498 Car-Chr16:3170117 3.25E-94 dispersed
Car14g01899 Car-Chr14:14619860 Car06g00867 Car-Chr6:6774265 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g110 Blo02g01141 . . . Bpe05g00682 . . . Cmo06g01054 . . . . . . Cpe14g00471 . . . . . . . . Cla07g01414 Cam07g1515 Cec07g1611 Cco07g1571 Clacu07g1503 Cmu07g1473 Cre07g1850 . . Cone6ag0840 Cone9ag0837 . . . Cme07g01579 . . . . . . Bma05g00858 . . . . . Cma16g00555 Car06g00867 . . . . . . . . . . . . . . . . . . Csa04g00643 Chy07g01167 .
Vvi15g757 . . . . Bpe14g00955 . . . . . Cma06g01045 Cma14g02095 Car06g00867 Car14g01899 Sed02g1733 Cpe08g00581 Cpe03g01780 Bhi01g00453 Tan10g0143 Cmetu03g2166 . Hepe05g2006 . Lcy11g2035 Cla05g00109 Cam05g0119 Cec05g0116 Cco05g0123 Clacu05g0111 Cmu05g0110 Cre05g0174 . . Cone11ag0480 Cone18ag1029 Lsi05g02104 . . Cme06g00114 . Blo16g00460 Bda11g00220 Bda13g00372 Bpe13g00977 . Bma02g01082 Bma06g01165 . Cmo06g01054 Cmo14g02159 . . . . . . . . . . . . . . . . . . . . . Csa03g00824 Chy06g00115 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005300 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00867 Car_Chr06 FPKM 10.356467 12.328367 18.493174 18.109411 166.614716 155.80864 171.784714 19.03487 19.350882 19.624104