Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00872 ATGAAGGATTTGAATTCGGATGTTTTTGACCCAACGGCTGGGATGGATTCGGATTATTCGCGTGCTTCTTGTTCTTCACCATCCGACGCGGATTTTGGATTCGCTTTTAACGATAGTAATTTCTCTGATCGGTTGCTTCGGATTGAGATTATGGGGGAACCGGAGGAGGCCCGTCCAGATTCTGTGGGATGTACGAGCATCCTCGATTGGGCTCGACGGAAGAGACGGAGAGAAGATTGCAAGAAGGATAACGTTGTCGATCTAAATGGATGCCCTGAGGAGCAAGTCTTAAATGGAAGCCATCCTGATATGGATGATGGCATACCTTGTGACAATCTAGATGATGAACCTGCTCAAATGATTGAAGAGCTACATTCAGGTGATGAAGCTGCAAATGGCGATGAATCAAGCTGGGGGATGGATTGTTCTACTGTTATTAAAGTCAAAACGTTGCATATCAGCTCTCCAATTTTGGCTGCTAAAAGCCCTTTTTTCTACAAGCTTTTCTCTAATGGGATGAGGGAGTCTGAACAGCGGAATGTGACCTTACGAATCAATGCCTCAGAGGAAGCTGCACTAATGGAGTTGCTGAATTTTATGTATAGCAATACCCTATCTTGTAGCACTGCTTTGTCTTTGCTCGATGTGCTTATGGCCGCCGACAAATTTGAGGTTGCTTCATGCATGAGGTATTGCAGCAGGCTTTTAAGAAATTTACCCATGACACCTGAGTCTGCATTGCTATATCTAGAGCTTCCATCCAGTGTCTTAATGGCTGAAGCAGTCCAACCATTGACTGATGCAGCAAAGCAGTATCTTGCTGTTCGCTACAAGGACATAACCAAGTACCAGGATGAGGTTATGGCTTTGCCTCTTGCAGGAGTGGAGGCAATATTGTGTAGTGACGATCTACAGGTTGCATCAGAGGATGCAGTATACGATTTCATCTTGAAGTGGGCTAGATCTCAGTATTCAAGGTTGGAGGAGAGGCGAGAAGTGCTGGGGGCCAGACTTGCACGTTATATTCGATTCCCCTTTATGACCTGTCGAAAGCTTAAGAAAGTCCTGACCTGCAATGACTTCGACCACGAGGTTGCTTGCAAACTTGTGCTTGAGGCCCTTTTCTTCAAGGCGGAGGCCCCTCACCGGCAGAGAATCATAGCTGCGGATGAGTCGGCTTCCTCAAACCGCCGATTCTTTATTGAGAGAGCATACAAATACCGTCCAGTCAAGGTTGTTGAGTTTGATTGCCCTCGGCAGCAGTGTGTAGTATACCTGGACCTAAAGCGGGAAGAATGTACAAATTTGTTTCCGTCTGGGAGAGTGTATTCTCAGGCATTCCACTTGGGTGGACAAGGATTTTTCCTTTCAGCTCATTGCAACATGGACCAGCAGAGCTCATTTCATTGTTTTGGGCTTTTCTTGGGAATGCAGGAAAAAGGATCAGTATCTTTCGCAGTAGACTATGAATTTGCTGCAAGATCAAAGCCTACAGAGGAATTTGTTAGCAAATATAAGGGCAATTACACATTCACTGGAGGCAAGGCTGTTGGCTATAGAAACTTGTTTGCAATACCATGGACTTCTTTCATGGCCGAAGATAGTCTATACTTCATAAATGGAGTCCTCCATCTTAGAGCTGAACTTACCATCAGGCCCTGA 1662 45.43 MKDLNSDVFDPTAGMDSDYSRASCSSPSDADFGFAFNDSNFSDRLLRIEIMGEPEEARPDSVGCTSILDWARRKRRREDCKKDNVVDLNGCPEEQVLNGSHPDMDDGIPCDNLDDEPAQMIEELHSGDEAANGDESSWGMDCSTVIKVKTLHISSPILAAKSPFFYKLFSNGMRESEQRNVTLRINASEEAALMELLNFMYSNTLSCSTALSLLDVLMAADKFEVASCMRYCSRLLRNLPMTPESALLYLELPSSVLMAEAVQPLTDAAKQYLAVRYKDITKYQDEVMALPLAGVEAILCSDDLQVASEDAVYDFILKWARSQYSRLEERREVLGARLARYIRFPFMTCRKLKKVLTCNDFDHEVACKLVLEALFFKAEAPHRQRIIAADESASSNRRFFIERAYKYRPVKVVEFDCPRQQCVVYLDLKREECTNLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMAEDSLYFINGVLHLRAELTIRP 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6821814 6825585 + Carg20878-RA Car06g00872 150608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00872 553 MobiDBLite consensus disorder prediction 1 22 - -
Car06g00872 553 Pfam BTB And C-terminal Kelch 263 355 IPR011705 -
Car06g00872 553 ProSiteProfiles BTB domain profile. 140 209 IPR000210 GO:0005515
Car06g00872 553 Pfam BTB/POZ domain 140 237 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00872 - - - csv:101213003 1065.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00872 Car-Chr6:6821814 Car08g00760 Car-Chr8:4971073 0 dispersed
Car14g01890 Car-Chr14:14568220 Car06g00872 Car-Chr6:6821814 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g83 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0261 Cone12ag0267 . . . . . . . . . . . . . . . . . Cma06g01039 . Car06g00872 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001470 3 2 3 4 3 2 4 2 2 2 2 2 3 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 3 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00872 Car_Chr06 FPKM 7.892689 9.490593 10.950697 12.591146 9.924603 9.840895 9.576127 2.23885 1.870809 1.561451