Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00874 ATGGGCACTAGTGAAGAGGCCAAGGCTGTGAAGTCTGAAAAACCATCTTCACCAACGCAGGATCAGAACAATGGGTCAAATTCGGCCAGTATTCATGTTTTTCCTGATTGGGCAGCCATGCAGGCATATTATGGTCCTAGAGTTGCAGTTCCACCATACTACAACTCTGCTGTGGCTTCAGGTCATGCTCCTCACCCTTATATGTGGGGCCCACCACAGATGATTCCTCCATATGGCACTCCCTATGCAGCAATCTATTCTCATGGAGGTGTTTATGCACATCCTGCAGTTTCTATGGGACCACATTCACATGGCCCTGGTGTTCCCTCATCACCTGCTCCTGCTGTAACTCCTTTGAGCATTGAAACACCTTCAAAGGTGTCTGGAAACAGTAGTCAAGGTTTAATGAAGAAACTGAAAGGTTTCGACGGCCTGGCAATGTCTATCGGCAATGTTAATACTGAGAGTGCTGATGGGCCCAGTGAGCACGGACAATCAGAGAGTATGGAAACTGAAGGTTCCAGTGATGGAAGTGATGGAACTACTGCTGGGGCAAATCAAACCAAAAGGAAAAGAAGCCGTGAGGGCACACCTACCACTGGGAAAGATGCAAAAATTGAGACTCAAGGAAGTCCAGTTACTCCTGCTGAAATGAACGAAAGCTCTAGCAAGTTATTGGGTATAACCAAAGCAGCTGATGCAACTGGAAAGCTTGGATCTGTGATTTCTCCTGGAATGTCTACAGCTTTGGAACTTAGGAATCCTTCTAGTATGAACACCATTTCAGGTCCAACGAGCGTCCCACCTTGTTCGGTATTGCCTTCTGAAGTCTGGCTACAGAATGAAAAAGAACTAAAACGGGAAAGGAGAAAACAGTCGAATAGAGAATCCGCTAGGAGGTCGAGGTTAAGGAAGCAGGCTGAGACTGAAGAACTAGCTCATAAAGTCGATTCACTGACTGCGGAGAACGTCGCTATTAGATCTGAAATAAGTAGATTGTCGGAGAATTCCGAGAAACTTAAGCAAGAAAATGCTACATTAATGGAGAAGCTTAAAAGCGCTCAATCAGGTCGAACAGAAGCCTTAGACATGAACGAAAAAAGGACGCAACATCTTGTAAGCACAGACATCAAAGGACCTGTGAACAAAAGCATTAACGAAGACAGTAACATCTGCAAGAAGAAATCGAGTTCGGGAGCAAAATTGCGTCAACTCTTGGACACGAATCCAAGGGCTGACTGCGTCGCCGCCAGCTAA 1257 45.82 MGTSEEAKAVKSEKPSSPTQDQNNGSNSASIHVFPDWAAMQAYYGPRVAVPPYYNSAVASGHAPHPYMWGPPQMIPPYGTPYAAIYSHGGVYAHPAVSMGPHSHGPGVPSSPAPAVTPLSIETPSKVSGNSSQGLMKKLKGFDGLAMSIGNVNTESADGPSEHGQSESMETEGSSDGSDGTTAGANQTKRKRSREGTPTTGKDAKIETQGSPVTPAEMNESSSKLLGITKAADATGKLGSVISPGMSTALELRNPSSMNTISGPTSVPPCSVLPSEVWLQNEKELKRERRKQSNRESARRSRLRKQAETEELAHKVDSLTAENVAIRSEISRLSENSEKLKQENATLMEKLKSAQSGRTEALDMNEKRTQHLVSTDIKGPVNKSINEDSNICKKKSSSGAKLRQLLDTNPRADCVAAS 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6835704 6840804 + Carg20876-RA Car06g00874 150610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00874 418 MobiDBLite consensus disorder prediction 352 404 - -
Car06g00874 418 MobiDBLite consensus disorder prediction 1 30 - -
Car06g00874 418 MobiDBLite consensus disorder prediction 375 404 - -
Car06g00874 418 MobiDBLite consensus disorder prediction 150 187 - -
Car06g00874 418 Pfam bZIP transcription factor 282 344 IPR004827 GO:0003700|GO:0006355
Car06g00874 418 Coils Coil 316 357 - -
Car06g00874 418 MobiDBLite consensus disorder prediction 13 30 - -
Car06g00874 418 MobiDBLite consensus disorder prediction 202 225 - -
Car06g00874 418 MobiDBLite consensus disorder prediction 150 225 - -
Car06g00874 418 Pfam Disordered region downstream of MFMR 133 261 - -
Car06g00874 418 MobiDBLite consensus disorder prediction 283 314 - -
Car06g00874 418 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 284 347 IPR004827 GO:0003700|GO:0006355
Car06g00874 418 Pfam G-box binding protein MFMR 1 97 IPR012900 -
Car06g00874 418 MobiDBLite consensus disorder prediction 101 134 - -
Car06g00874 418 MobiDBLite consensus disorder prediction 251 269 - -
Car06g00874 418 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 289 304 IPR004827 GO:0003700|GO:0006355
Car06g00874 418 MobiDBLite consensus disorder prediction 116 134 - -
Car06g00874 418 MobiDBLite consensus disorder prediction 251 271 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00874 Car-Chr6:6835704 Car07g00439 Car-Chr7:2224683 1.63E-45 dispersed
Car14g01887 Car-Chr14:14551697 Car06g00874 Car-Chr6:6835704 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3720 PF16596 MFMR_assoc 1.30E-21 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00874 K09060 - csv:101213720 679.093