Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00892 ATGGTTGCGGCGCCAGAAAATTCCGATTCCTCTCCTGCTTCAGTGCCGCCGCCGGCGTCAGTTGAGGATAAGGAGAAAGCCTTGGTTCCAGTGCCAGTCTCTAATAAAACCAAAGAAGATTCTGTACCAAAGAAAGCCTCCGGTGGATCAATTGACAGGGATATCGCTCTTGCGGAGGTTGAAAAGGAGAAAAGGTTTTCCTTCATCAAGGCCTGGGAAGATAGTGAAAAATCAAAGGCTGAGAACAAGGCACAGAAGAAGCTCTCTGCTGTTTCTGCATGGGAGAACAGCAAAAAAGCCAACCTTGAAGCAAAGTTGAAAAAAATTGAGGAACAATTGGAGAAGAAAAAGGCTGAATATGGAGAAAAAATGAAAAACAAAGTAGCCATCATTCACAAAGAAGCAGAAGAAAAGAAGGCAACGGTGGAAGCGCAACGGTCGGAGGAGCTGCTAAAGGCGGAGGAGACGGCTGCCAAATTCCGAGCAACCGGAACCATCCCAAAGAAATTTTTGGGATGTTTTTAA 525 45.71 MVAAPENSDSSPASVPPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVAIIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6928607 6931903 - Carg24637-RA Car06g00892 150628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00892 174 Pfam Remorin, C-terminal region 65 169 IPR005516 -
Car06g00892 174 MobiDBLite consensus disorder prediction 1 51 - -
Car06g00892 174 PANTHER CARBOXY-TERMINAL REGION REMORIN 13 174 - -
Car06g00892 174 Coils Coil 132 152 - -
Car06g00892 174 Pfam Remorin, N-terminal region 12 60 IPR005518 -
Car06g00892 174 PANTHER OS02G0117200 PROTEIN 13 174 - -
Car06g00892 174 Coils Coil 92 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00892 - - - csv:101203690 280.411
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g01233 Car06g00892 CCT
Car02g01233 Car06g00892 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00805 Car-Chr2:5862435 Car06g00892 Car-Chr6:6928607 1.56E-64 dispersed
Car02g01233 Car-Chr2:8352666 Car06g00892 Car-Chr6:6928607 8.61E-56 dispersed
Car06g00892 Car-Chr6:6928607 Car19g00305 Car-Chr19:4599472 1.36E-62 dispersed
Car14g01836 Car-Chr14:14279683 Car06g00892 Car-Chr6:6928607 5.41E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g347 . . . . . . . . Cmo06g01081 . Cma02g01472 . Car02g01233 . . . Cpe05g00657 . . . . . . . . . . . . . . . Cone12ag0317 . Cone9ag0765 . . Chy09g01204 . . . . . . Bpe11g00655 . . . Cmo02g01507 . Cma06g01060 . Car06g00892 . Cpe08g00557 . Bhi12g00226 . . . . . . Cla01g00283 Cam01g0293 Cec01g0286 Cco01g0299 Clacu01g0292 Cmu01g0278 Cre09g2229 Lsi09g00282 . . Cme09g01741
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009541 2 0 1 0 1 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00892 Car_Chr06 FPKM 13.034225 14.069324 12.367112 12.816427 17.855577 18.387861 18.805843 18.077177 18.314869 20.067698