Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00910 ATGAAGTCGGTTTCAGGTCGTTTCATGTTTGGTCTTTGTTTTAGGTCGGGTTCGGTTTGTTTGGACGTTATCAATCAAACTTGGAGTCCCATGTTCGATCTTGTAAATGTTTTTGAAGTGTTCCTACCACAACTTCTTTTGTATCCCAATCCATCAGATCCTTTGAATGGAGAGGCTGCAGCCTTGATGATGCGTGACCGTGTTGCTTATGATCAAAGAGTAAAAGAATACCGTGAAAGATACGCCAAGGCAGAAGACATAGTAGCTGCACCCGACCAATCAAGCGACGAGGAACTAAGTGAAAATGAATCCGAGTCGAGCGAGGAGGAAGTTGCAGGGAAAGCGGACCTCTAA 354 44.63 MKSVSGRFMFGLCFRSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKADL 117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7036743 7041396 - Carg24655-RA Car06g00910 150646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00910 117 Coils Coil 67 87 - -
Car06g00910 117 MobiDBLite consensus disorder prediction 85 117 - -
Car06g00910 117 Pfam Ubiquitin-conjugating enzyme 15 77 IPR000608 -
Car06g00910 117 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 83 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00910 K10576 UBE2H, UBC8; ubiquitin-conjugating enzyme E2 H [EC:2.3.2.23] - csv:101221190 161.384
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g01207 Car06g00910 CCT
Car02g01208 Car06g00910 CCT
Car02g01207 Car06g00910 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00910 Car-Chr6:7036743 Car10g00130 Car-Chr10:612080 3.85E-41 dispersed
Car06g00910 Car-Chr6:7036743 Car15g01115 Car-Chr15:8799023 9.46E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g1 . . . Bda08g00515 . Bpe07g00104 . Bma14g00608 . Cmo16g00658 Cma02g01438 . Car02g01208 . . . Cpe05g00646 . . . . . . . Cla07g00786 Cam07g0848 Cec07g0901 Cco07g0883 Clacu07g0823 Cmu07g0826 Cre07g1184 . . . . . Csa05g00266 . . . . Bda07g00484 . . Bpe11g00661 . Bma12g00073 . Cmo02g01473 Cmo15g01132 . Cma16g00602 Car06g00910 . . Cpe13g00146 Bhi12g00184 . . . . . . Cla01g00250 Cam01g0255 Cec01g0247 Cco01g0261 Clacu01g0253 Cmu01g0243 Cre09g2266 Lsi09g00241 . Chy07g01225 .
Vvi2g14 Blo02g01112 . Bda06g00114 Bda08g00514 Bpe05g00648 . Bma07g01664 . Cmo06g01099 . . . Car02g01207 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00821 Bma12g00072 . . . . . Car06g00910 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000389 3 10 1 5 4 3 5 3 3 3 3 3 5 4 4 4 3 4 5 3 4 3 3 4 4 3 4 10 11 3 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00910 Car_Chr06 FPKM 11.471901 11.823933 13.551082 13.732904 14.147895 12.90528 13.853907 28.109241 26.284678 26.944563
Car06g00910 Car_Chr00 FPKM 7.291667 6.981688 7.399207 8.771928 6.349205 7.399285 7.690486 12.447233 10.788456 10.093796