Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car06g00939 | ATGCGTGATTCAATCCCACTGTACTCTTCTCCCATCCGGACGGTGGATAATTCGCCTCTGCTTGGCTATTCCGTCGCCGATGGATTCTTCCGATCGCGAGGGTTTATTCGTCGTTCGCCTCAGCCTCTTCGTGGCGCGGTTCGTCTTCTCCGCCGTGCAAGTGGCCGGCAGATGATGCTTCAAGAGCCCTCCGTTCGTGTTCGTGAAACCGCCGCCGAGCAGCTGGAGGAACGGCAGAGCGATTGGGCGTACTCGAAGCCGATAATCCTTTTGGACCTTCTATGGAACTTGGTTTTCGTCGCCATTAGTTTCACTATCCTAGGGCTCAGCACGAGCGAAAATCCTTCTGTGCCGCTTAGGTTTTGGATCATTGGATATGCTTTGCAGTGTATAATTCACATGTCCTGTGTTGCAGCTGAGTATAAGCGGCGGCACTTGACGAGAGAGCCCGCCGGATTGGACCGTGGCAGCGACTGGATGAGCGGCGATGACTCGAATTCCGCCTCTGGAAGTGATGGAGATGAAGAGCTTACCGTGAATGAAGAAGAACCAAGCAATCTTGTGAAGCATATTGAATCTGCAAATACCTTGTTCTCTTTCATCTGGTGGCTGCTAGGATTTTACTGGGTCACTACTGGAGGCCAAGAATTGATAGATGATTCACCTCAGCTATACTGGCTTTGTATTACATTCCTTGCTTTCGACGTCGTGTTTGTTCTGATTTGCGTCGCAATTGCCTGTCTTGTTGGTGTTGCTATTTGCTGCTGTCTTCCTTGCATAATTGCTATCTTGTATGCGGTTACCGATCAGGAAGGAGCAACGAAGGAGGAGATCGATCGCTTACCGAAGTACATATTCAACAGAACATGTGATGTTGAGAAAGGGATTGGTGATACGCAAGAATCTACTGGAGGAATAATGACTAAATGTGACACTGATGCACCTACCAAGCATTTTCTTCGCCCTGAAGATTCTGAGTGTAGCATCTGCCTCAGCGCTTACGAAAACGAAACGGAGCTACGAGAGCTGCCCTGTAACCACCATTTCCACTGCAACTGCATCGACAAATGGCTACACATCAATGCAACCTGCCCGCTCTGCAAGTTCAACATATTGAAGCCGAACGGTTCCAGTAGCGAAGAAGTGTGA | 1149 | 49.35 | MRDSIPLYSSPIRTVDNSPLLGYSVADGFFRSRGFIRRSPQPLRGAVRLLRRASGRQMMLQEPSVRVRETAAEQLEERQSDWAYSKPIILLDLLWNLVFVAISFTILGLSTSENPSVPLRFWIIGYALQCIIHMSCVAAEYKRRHLTREPAGLDRGSDWMSGDDSNSASGSDGDEELTVNEEEPSNLVKHIESANTLFSFIWWLLGFYWVTTGGQELIDDSPQLYWLCITFLAFDVVFVLICVAIACLVGVAICCCLPCIIAILYAVTDQEGATKEEIDRLPKYIFNRTCDVEKGIGDTQESTGGIMTKCDTDAPTKHFLRPEDSECSICLSAYENETELRELPCNHHFHCNCIDKWLHINATCPLCKFNILKPNGSSSEEV | 382 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 7258309 | 7261808 | - | Carg24955-RA | Car06g00939 | 150675 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car06g00939 | 382 | SUPERFAMILY | RING/U-box | 318 | 374 | - | - | |
| Car06g00939 | 382 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 29 | 378 | - | - | |
| Car06g00939 | 382 | MobiDBLite | consensus disorder prediction | 154 | 180 | - | - | |
| Car06g00939 | 382 | CDD | RING-H2_RNF111_like | 326 | 370 | - | - | |
| Car06g00939 | 382 | Pfam | Ring finger domain | 326 | 368 | IPR001841 | - | |
| Car06g00939 | 382 | PANTHER | TARGET OF ERK KINASE MPK-1 | 29 | 378 | - | - | |
| Car06g00939 | 382 | SMART | ring_2 | 327 | 367 | IPR001841 | - | |
| Car06g00939 | 382 | MobiDBLite | consensus disorder prediction | 160 | 174 | - | - | |
| Car06g00939 | 382 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 307 | 375 | IPR013083 | - | |
| Car06g00939 | 382 | ProSiteProfiles | Zinc finger RING-type profile. | 327 | 368 | IPR001841 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car06g00939 | Car17g00511 | CCT | |
| Car06g00939 | Car14g01816 | CST | |
| Car06g00939 | Car16g00969 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car06g00939 | Car-Chr6:7258309 | Car16g00969 | Car-Chr16:8084760 | 3.24E-138 | dispersed | |
| Car17g00511 | Car-Chr17:4616280 | Car06g00939 | Car-Chr6:7258309 | 8.65E-15 | dispersed | |
| Car14g01816 | Car-Chr14:14162160 | Car06g00939 | Car-Chr6:7258309 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car06g00939 | - | - | csv:101205399 | 667.922 |