Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00949 ATGAAGAACGACGAACAAGTTCGGACTCTGTTTGGGATTTCCCTCACCGAGCGCCCTAAATGGCACCAGTTTCTCATTTGTTCGTCTGGATTTTTCTTTGGCTACTTAGTTAATGGCATCTGTGAGGAATATGTATATAACAAGCTGCAATTCAGTTATGGATGGTACTTCACATTTATTCAAGGATTTGTATATCTTTTTCTGATTTATCTCCAAGGATTCACTGCCAAGCAAATGGTTAATCCTTGGAAGACTTATGTAAAGCTTTCTGCTGTGTTGATGGGTTCCCATGGCCTTACCAAAGGATCTTTGGCTTTTCTAAACTATCCTGCTCAGCTTATGTTCAAATCTACGAAGGTTTTGCCCGTGATGATAATGGGTGCGTTCATACCCGGCCTTAGACGAAAGTATCCAGCTCACGAATATGTTTCGGCTGTACTTTTGGTTGTGGGTTTGATCATCTTCACATTAGCAGATGCACAAACATCTCCGAACTTCAGTATTCTTGGTGTGATCATGATATCGGGCGCTCTAATCATGGATTCGTTTCTTGGTAATTTGCAAGAAGCCATCTTTACGATGAATCCCGAAACGACACAGATGGAGATGCTGTTTTGTTCGACTGTCGTTGGCTTGCCTTTCTTGATCCCGCCCATGCTTTTGACAGGAGAATTGTTTAAAGCATGGACTTCATGTTCTCAGCACAAATACGTATACGGAGTGTTGGTTTTTGAAGCCATGGCAACCTACATAGGCCAAGTCTCTGTTCTTTCACTCATTGCCCTATTTGGGGCAGCTACCACAGCCATGATAACAACAGCTAGAAAGGCAGTGACATTACTTCTATCTTACTTGATATTCACAAAGCCATTAAGTGAACAACATGCGACGGGTCTACTACTCATAGGGATGGGGATCACACTGAAGCTCTTACCCGATTACAAGCCGAAAAACAGAGCTTTTCCGAGTACCGAGAGTTCAAGACCTGCTAACATTGACAATGAAATGGCAGCACATCAAATAAGAAGCGAAAAAGATGAAGAAAGAAGGCCATTG 1056 42.42 MKNDEQVRTLFGISLTERPKWHQFLICSSGFFFGYLVNGICEEYVYNKLQFSYGWYFTFIQGFVYLFLIYLQGFTAKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMIMGAFIPGLRRKYPAHEYVSAVLLVVGLIIFTLADAQTSPNFSILGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPFLIPPMLLTGELFKAWTSCSQHKYVYGVLVFEAMATYIGQVSVLSLIALFGAATTAMITTARKAVTLLLSYLIFTKPLSEQHATGLLLIGMGITLKLLPDYKPKNRAFPSTESSRPANIDNEMAAHQIRSEKDEERRPL 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7317109 7320627 + Carg23884-RA Car06g00949 150685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00949 352 MobiDBLite consensus disorder prediction 320 352 - -
Car06g00949 352 MobiDBLite consensus disorder prediction 338 352 - -
Car06g00949 352 Pfam UAA transporter family 23 310 IPR013657 GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00949 K15277 SLC35B3, PAPST2; solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3 - csv:101208286 636.336
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00949 Car15g01083 CCT
Car06g00949 Car15g01083 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00949 Car-Chr6:7317109 Car18g01076 Car-Chr18:10921252 2.53E-16 dispersed
Car14g01804 Car-Chr14:14108817 Car06g00949 Car-Chr6:7317109 0 wgd
Car15g01083 Car-Chr15:8505185 Car06g00949 Car-Chr6:7317109 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g405 . . . . . . . Bma14g00580 Cmo06g01139 . . Cma15g01195 . Car15g01083 . . . . . . . . . . . . . . . . . Cone8ag0332 Cone12ag0329 . . . Csa05g00327 Chy09g01182 . . . Bda07g00499 . . Bpe11g00688 . . . . Cmo15g01259 Cma06g01112 . Car06g00949 . Cpe08g00505 Cpe13g00179 Bhi12g00199 . . . . . Lcy12g1706 . . . . . . . Lsi09g00313 . . Cme09g01715
Vvi15g485 . . . . . . . . . . Cma06g01112 . Car06g00949 . Sed02g1614 Cpe08g00505 . Bhi01g00317 Tan10g0306 Cmetu09g0320 . Hepe05g1904 . Lcy11g1926 . . . . . . . . Cone15ag0352 . . Lsi05g01998 . . . . . . . . . . . . Cmo06g01139 . . . . . . . . . . . . . . . . . . . . . . Csa03g00933 Chy06g00211 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001533 3 4 2 2 2 2 3 2 1 2 1 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 6 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00949 Car_Chr06 FPKM 126.605133 129.540085 117.613091 124.449516 146.849579 151.611938 139.670258 165.048538 170.670685 168.13678
Car06g00949 Car_Chr00 FPKM 136.515793 137.552231 114.520615 115.252319 155.907135 157.108521 144.345856 172.013596 183.789474 173.830795