Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00953 ATGGTGAGAGGCAAAACTCAGATGCGGCGGATCGAAAACGCCACGAGTCGCCAAGTCACGTTTTCGAAGCGCCGCAATGGGTTGCTCAAGAAGGCCTTTGAGCTCTCAGTGCTCTGTGAAGCTGAAGTGGCCCTCATCATTTTCTCTTCTACTGGGAAGCTTTGTGAATTTGCTAGCTCAAGCATGCAGGCCACAGTGGAGCGATTTCAAAGGCATACAAGGGAAACCCATCATCTTGAACGTTCTTTACCTCATCACCATGATCAAGCTGATGAGGCTGCAAATTTGTTGAAGGAGATAGAGTCACTTGAAGTTTCAAAGAGGAAATTGTTGGGACAAGGTTTGGGATCAAGCTCTTATGAAGAACTTCAACAAATAGAACAGCAGCTTCATAGGAGCTTAGCCCATGTTCGAGCTACAAAGCATGAGGCTTACAAGGAACAGATTGATCAACTGAAAGAAAAGGAGAAATATTTGGCAGCTGAAAATGAAAAGCTAGCTAAAAAGTATTTGGTTCAACTCGAGCCTCGACAATCACTAACTCAAGTAGGAGAAGTTTCACCGAATCTTGAAACCAGCTCGACTTTCGACGTTGAAACGGAATTGTTCATCGGGCCACCAAAGTCGAGATCGAAGTGA 639 44.91 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSTGKLCEFASSSMQATVERFQRHTRETHHLERSLPHHHDQADEAANLLKEIESLEVSKRKLLGQGLGSSSYEELQQIEQQLHRSLAHVRATKHEAYKEQIDQLKEKEKYLAAENEKLAKKYLVQLEPRQSLTQVGEVSPNLETSSTFDVETELFIGPPKSRSK 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7342139 7346018 + Carg23888-RA Car06g00953 150689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00953 212 Coils Coil 93 113 - -
Car06g00953 212 Pfam K-box region 86 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car06g00953 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car06g00953 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car06g00953 212 ProSiteProfiles K-box domain profile. 86 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car06g00953 212 Coils Coil 142 169 - -
Car06g00953 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g01254 Car06g00953 CCT
Car06g00953 Car08g00827 CCT
Car06g00953 Car15g01075 CCT
Car06g00953 Car08g00827 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00953 Car-Chr6:7342139 Car15g01258 Car-Chr15:9821035 1.26E-56 dispersed
Car08g00827 Car-Chr8:5522695 Car06g00953 Car-Chr6:7342139 2.81E-70 transposed
Car14g01800 Car-Chr14:14086186 Car06g00953 Car-Chr6:7342139 1.50E-86 wgd
Car15g01075 Car-Chr15:8437266 Car06g00953 Car-Chr6:7342139 2.69E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3727 PF01486 K-box 9.30E-22 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00953 - - csv:101209501 306.219