Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00956 ATGGCGGTCGGAAGGCAACCCAACGAGCTTCCTCAGGTTTTGGTTCTAAGTCCTCCCGCGATTTTCACATCTCTGGAATCCCAATTCTCAATCAGATTTCATATGCTAAAACCATGGGATTCCAAACTCCCATTACTCCAATTTCTCACCTCTTATGCCCAATCCATCCCAGCCATGCTCGTTGTTCCAGGTGACCGTCTTCTAGTAAACTCCGCCATTCTCGACTGCCTCCCGTCGCTGAAACTCGTCGTCACTACCAGCGCCGGTGTCGATCACTTGGACGTCGCGGAGCTACGGCGGCGTGGGGTGGCCATTGCCTATGCAGGAAACTTGTTTTCTCAAGATGTCGCTGACATGGCGGTGGGATTACTAATCGACGTTCTCAGGAATGTGTCGGCAGGAGATCGGTTCGTGAGGCTAGGGCTTTGGCCTACGCAACGGGATTTCCCTCTCGCATTAAAGTTAAGCGGCAAGCAAATTGGGATAGTTGGATTGGGGAAAATAGGCACAGAAGTAGCCAAAAGGCTGGAGGGTTTTGGGTGCAGAATCTCATACAACTCAAGAACCAAAAAGCCATTAGTACCATACTCCTACTATTCCAATGTACATGAACTTGCAGCCAACTGTGAGGCCCTGATCATTTGTTGTGGCTTAACGGCCGAAACCCGCCATATGATCGACAGGGACGTGATGGTTGCGTTAGGCAAAGATGGAGTGATAGTCAACGTCGGCCGAGGGGCGATCGTCGACGAGAAGGAGCTGATTCGATGTTTGATTCAAGGGGAGATTAGGGGAGCTGGGCTGGATGTGTTTGAGAATGACCCTGAAATTCCTAAAGAGCTGTCTAATCTTGATAATGTAGTGTTGTCGCCACATGTTGCTGTGTTAACAACTGAATCTATGGTGGGATTGACTCAATTGGCGTTGGGGAACTTGGAGGCATTCTTCTCAAACAAACCTTTGGTGTCTCCATTTCATTTCCTCAAACCATGGCTTTCCAAACTCACCCTAACCCAATTCCTCACCTCCTATGCTCAATCCGTCCGAGCCTTGCTTTGCCGAGGTGGTGGTGTCAAACTCACCTCCCCCATTCTCGACTGCCTCCCCTCGCTCAAGCTCGTCGTCACTTCCAGCGTCGGAGTTGATCACTTGGACTTGCTGGAATTACGGCGGCGTGGGGTGGCCATTGCCTATGCAGGAAACTTGTTCTCTCAAGATGTCGCTGATATGGCGGTAGGATTACTAATCGACGTTCTTAGGAAACTTTCGGCGGGAGATCGAATCTCATATAACTCAAGGACCAAGAAGTCAGCGGTTCCATATTCCTACCATTCCAATGTATATGAACTCGCGACAAACTGTGAAGCACTCATAATTTGTTGCGGGTTAACTGAAGAAACCCGCCATATGATTAATAGGGAAGTGATGCTTGCACTAGGGAAAGATGGAGTGATAATCAATGTTGGTCGTGGTGCGATCATCAACGAGAAGGAGATGATTCAGTGTTTGATTCAGGGAGAGATTGGGGGAGCTGGACTGGATGTGTTTGAGAATGAACCTAATATTTCCGAACAGTTATTTAATCTGGATAATGTTGTGTTGTCGCCACATGCTGCTGTCTCAACATATGAATCTGCGGTGGGGTTGGTTAAGTTGCTGGTGGATAACTTGGAGGCATTCTTCTCGAACCAACCTTTGGTATCTCCCTTTCTCAATTAG 1719 48.46 MAVGRQPNELPQVLVLSPPAIFTSLESQFSIRFHMLKPWDSKLPLLQFLTSYAQSIPAMLVVPGDRLLVNSAILDCLPSLKLVVTTSAGVDHLDVAELRRRGVAIAYAGNLFSQDVADMAVGLLIDVLRNVSAGDRFVRLGLWPTQRDFPLALKLSGKQIGIVGLGKIGTEVAKRLEGFGCRISYNSRTKKPLVPYSYYSNVHELAANCEALIICCGLTAETRHMIDRDVMVALGKDGVIVNVGRGAIVDEKELIRCLIQGEIRGAGLDVFENDPEIPKELSNLDNVVLSPHVAVLTTESMVGLTQLALGNLEAFFSNKPLVSPFHFLKPWLSKLTLTQFLTSYAQSVRALLCRGGGVKLTSPILDCLPSLKLVVTSSVGVDHLDLLELRRRGVAIAYAGNLFSQDVADMAVGLLIDVLRKLSAGDRISYNSRTKKSAVPYSYHSNVYELATNCEALIICCGLTEETRHMINREVMLALGKDGVIINVGRGAIINEKEMIQCLIQGEIGGAGLDVFENEPNISEQLFNLDNVVLSPHAAVSTYESAVGLVKLLVDNLEAFFSNQPLVSPFLN 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7360341 7365172 - Carg23891-RA Car06g00956 150692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00956 572 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 428 539 IPR006140 GO:0051287
Car06g00956 572 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 121 294 IPR006140 GO:0051287
Car06g00956 572 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 58 321 IPR006139 GO:0016616|GO:0051287
Car06g00956 572 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 342 565 IPR006139 GO:0016616|GO:0051287
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00956 K15919 HPR2_3; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] - csv:101215727 520.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00956 Car-Chr6:7360341 Car08g00592 Car-Chr8:3861263 7.78E-80 dispersed
Car19g00572 Car-Chr19:7188124 Car06g00956 Car-Chr6:7360341 3.88E-13 dispersed
Car06g00951 Car-Chr6:7325854 Car06g00956 Car-Chr6:7360341 1.89E-76 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g430 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo03g00380 . Bda07g00029 . . . . . . . . . . Car06g00956 . . . . . . . . . . . . . . . . . . . . .
Vvi15g510 Blo01g00138 . . Bda08g00224 . Bpe05g00916 . Bma05g01119 . . Cma06g01120 . Car06g00956 . . Cpe08g00498 . Bhi01g00300 . . . . . Lcy11g1918 Cla05g00207 Cam05g0224 Cec05g0227 Cco05g0233 Clacu05g0222 Cmu05g0214 Cre05g0275 . . . . Lsi05g01985 . . Cme06g00223 . . . . . . . Bma06g01231 . Cmo06g01148 . . . . . . . . . . . . . . . . . . . . . . Csa03g00943 Chy06g00219 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000708 2 4 2 3 2 4 2 4 3 4 2 5 3 4 4 3 4 3 3 3 5 3 3 4 3 4 5 3 1 2 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00956 Car_Chr06 FPKM 1.420543 2.287799 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Car06g00956 Car_Chr00 FPKM 1.261062 0.432395 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0