Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00966 ATGCTTTTTGTACATGTTAAAAGATCTGTTGTAAGGGAAGAGGTTCTGTCAAATGAAGAGGGTGAGCCTTCAGAGTTAGGTAGACCTTTCAGGCCACTTATTCGAAAGAGCAAGCTGGTTGTAGTGGATTTGGCAGGATCAGAGCGTATTCACAAGTCAGGGAGTGAGGGGCATCTGTTGGAGGAAGCTAAGTATATTAATCTATCACTTAGTGCTCTAGGAAAATGCATAAATGCTTTGGCAGAAAATAGTGCTCATGTTCCAATACGAGATTCCAAACTTACGAGATTGCTCAGAGATTCATTTGGAGGTTCAGCAAGAACTTCTTTGATTGTGACAATTGGTCCATCTCCACGTCATCGAGGAGAGACTTCTAGTACCATTCTGTTCGGCCAAAGGGCTATGAAGGTGGAGAATATGTTGAAAATAAAAGAAGAATTTGATTATAAAAGTTTGTCCAGGAAGCTTGAAGTACAGCTGGACAAACTGATTGCTGAAAATGAAAGACAACAGAAAGCTTTTGAAGATGAATTGGAAAAGATACATCTAGAAGCACAAAACCGCATATCTGAGGCTGAGAGAAATTTTGCTGATGCCTTGGAGAAGGAAAGTAAAAAATGCCAGCTGGATTATATGGAAACTGTCAAGAAATTGGAAGAGAAGTTGGTCTTGAACCAGCCAAGGATTGATCATGACGATTCTGTCCGTGACAAACGGAGTGGACAGGGGGGCTGTTTTTCTGCTGCTGAAGAAGTTGAAGTCAAAAAGTTGCTGGAAAATGAAGCAAACCTGAGAAAGGCAGCTGAAGAGGAGGTCAGCAGGCTTAGACATCAGCTAGAGCTATACAGGCAGCCAAATTTAGGTGATGAACCTGATACTGTAAAACTCACTAAATTAATGGAGGAGGAGGCTCTTCAGAAAAAGAAAATTGAAGAAGAAGTAATAATATTACGAAGCCAATTGTTGCAACTGACCCTCGAAGCTGAGCAGATGAGAAGGTGTCTTGATAGGGGTGGAGCTGAAAACGGATTTTCTGCTTATGATGCTCCTATGTCTCCATTTAGACATTCTCAACTCAAAGAAACAAAGAGCGGACACAAGCCATCAGTTGCCACTCTCTTTGAACAAGTTGGTTTGCAAAAAATCTTGTCCTTGCTGGACTCGGAAGATGCCAATGTACGAATTCATGCTGTTAAAGTATTGGCCAATCTTGCAGCTGAAGGCAATGATCACTGGCCATTGGCTATTATAGACGAGTCAAATCAAAAAAGGATCGTTGAGGCAGGTGGTCTTATTTCATTACTGATGCTTCTTAGAAGCTATGAGGATGAAACGGTTAGAAGAGTAGCAGCCGGTGCAATTGCCAACCTTGCTATGAATGAAGCCAATCAAGAACGAATAATGGCTGAAGGGGGAATCAGTCTACTGTCATTGACTGCCAATGCTGCTGAGGACCCACAGACTCTGCGCATGGTTGCTGGAGCCATTGCTAATTTATGTGGCAATGGGACGAACAGCGGCAGATCTCTTTTGATAGAAGATGGAGGTCTCCCTTGGATCATACAAAATGCAAACAATGAAGTGGCACCAATCCGTCGCCATATCGAGCTTGCTTTATGCCATTTAGCACAACATGAAGTAAATGCAAAGGAGATGATTAGTGGAGGTGCACTTTGGGAGTTAATTCGCATATCGCGCGACTGTTCCAGAGAGGATATACGGAATCTTGCTCGTCGAACACTGACTTCCAGTCCCGTCTTTCGATCTGAAATGAGAAGGCTGAGAATTGAATGCTAA 1797 42.68 MLFVHVKRSVVREEVLSNEEGEPSELGRPFRPLIRKSKLVVVDLAGSERIHKSGSEGHLLEEAKYINLSLSALGKCINALAENSAHVPIRDSKLTRLLRDSFGGSARTSLIVTIGPSPRHRGETSSTILFGQRAMKVENMLKIKEEFDYKSLSRKLEVQLDKLIAENERQQKAFEDELEKIHLEAQNRISEAERNFADALEKESKKCQLDYMETVKKLEEKLVLNQPRIDHDDSVRDKRSGQGGCFSAAEEVEVKKLLENEANLRKAAEEEVSRLRHQLELYRQPNLGDEPDTVKLTKLMEEEALQKKKIEEEVIILRSQLLQLTLEAEQMRRCLDRGGAENGFSAYDAPMSPFRHSQLKETKSGHKPSVATLFEQVGLQKILSLLDSEDANVRIHAVKVLANLAAEGNDHWPLAIIDESNQKRIVEAGGLISLLMLLRSYEDETVRRVAAGAIANLAMNEANQERIMAEGGISLLSLTANAAEDPQTLRMVAGAIANLCGNGTNSGRSLLIEDGGLPWIIQNANNEVAPIRRHIELALCHLAQHEVNAKEMISGGALWELIRISRDCSREDIRNLARRTLTSSPVFRSEMRRLRIEC 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7408764 7416434 + Carg23901-RA Car06g00966 150702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00966 598 ProSiteProfiles Kinesin motor domain profile. 1 137 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car06g00966 598 Coils Coil 258 278 - -
Car06g00966 598 Coils Coil 300 327 - -
Car06g00966 598 ProSitePatterns Kinesin motor domain signature. 37 48 IPR019821 GO:0003777|GO:0005524|GO:0007018
Car06g00966 598 Pfam Kinesin motor domain 34 137 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car06g00966 598 Coils Coil 153 202 - -
Car06g00966 598 Pfam Armadillo/beta-catenin-like repeat 421 458 IPR000225 GO:0005515
Car06g00966 598 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 472 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00966 K10396 KIF5; kinesin family member 5 - csv:101212194 979.548
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00966 Car15g01064 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01276 Car-Chr2:8550613 Car06g00966 Car-Chr6:7408764 0 dispersed
Car06g00966 Car-Chr6:7408764 Car15g01064 Car-Chr15:8370581 0 dispersed
Car14g01790 Car-Chr14:14000192 Car06g00966 Car-Chr6:7408764 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g464 . . . . . . . . . . . Cma15g01176 . Car15g01064 . . . . . . . . . . . . . . . . . Cone8ag0352 . . . . . Chy09g01147 . . . . . . . . . . . Cmo15g01237 . . Car06g00966 . . . Bhi12g00358 . . . . . . . . . . . . . . . . Cme09g01679
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g00966 Car_Chr06 FPKM 0.567748 0.815276 0.601741 0.491933 1.170059 1.704256 1.073662 0.809961 0.751261 0.63969