Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car06g00971 | ATGGAAGAGAGAGAGGCTATAAGTACAGGAGTAACTGTGATAGGAGCCGAAGCTCCGTCGGCTTATCATGTGGCTCCGAGAACCGATAACCCGCCGCCGGCCGGTGGTTCTCCTACCGTCGCCGCCACGCCGGTCAGCGTTGGGTTGCCTGCTAGTGGAACCACAGGGAAGAAGAAGCGAGGCAGACCTAGGAAATACGGCCCGGATGGAACGATCACCATGGCATTGTCGCCATTGCCGCTTTCGTCCTCAGCTCCAGGGGCCGGCGGGTTTTCCATTACCAAGCGAGGGAAGAGCCGGTTAGGCGGCTCCGATTTGAAGCAAAACAAGAAAATGGGAATGCAATATATAGGCCAATGGAATGCATGTAATGTCGGTACAAACTTCATGCCTCATGTCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCGTTTTCTCAACAAGGTCCTCGAGCAATCTGTGTTCTTTCTGCGAATGGATTAGTTTCAAATGTCACTCTTCGGCAGCCCGATTCTTCGGGCGGTACTTTAACATATGAGGGTCGTTTCGAGATACTTTCCTTATCTGGATCATTCACTCCTTCTGAAAACCAAGGAGCGAGAAGCAGGTCGGGTGGGTTGAGCGTCTCCTTGGCAAGCCCGGACGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTGATAGCTGCAAGCCCTATACAGGTTGTGGTAGGGAGTTTTGTACCAACCAGCCAACCCGATCCGAAAGTAAAGAAACCAAAGCCCGAGTTGTTGTTAACTGCAGCCCCTGTTGCTGCAGCGCCAAGCACGACACCAGCCACCACCGTGCCTACTTCCTCCAATGCTGATACAGACGACGGGTTAAACGGTAACAGTCAGCAAACTCCTGAATCCCAAAAACCGACTACTTTCCCTCCTGCTAGTTTTGAGAGAGAGCGAGACGATTGGGGTGCTGCCAATACTGCTGTGCATTCCTTGCAGGAGCCGAGAAATACCGGTACCGACATCAATATATCGCTGCAGGACTAA | 1041 | 52.26 | MEEREAISTGVTVIGAEAPSAYHVAPRTDNPPPAGGSPTVAATPVSVGLPASGTTGKKKRGRPRKYGPDGTITMALSPLPLSSSAPGAGGFSITKRGKSRLGGSDLKQNKKMGMQYIGQWNACNVGTNFMPHVITVNAGEDVTMKIISFSQQGPRAICVLSANGLVSNVTLRQPDSSGGTLTYEGRFEILSLSGSFTPSENQGARSRSGGLSVSLASPDGRVVGGGVAGLLIAASPIQVVVGSFVPTSQPDPKVKKPKPELLLTAAPVAAAPSTTPATTVPTSSNADTDDGLNGNSQQTPESQKPTTFPPASFERERDDWGAANTAVHSLQEPRNTGTDINISLQD | 346 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 7448183 | 7451605 | + | Carg23906-RA | Car06g00971 | 150707 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car06g00971 | 346 | MobiDBLite | consensus disorder prediction | 266 | 346 | - | - | |
| Car06g00971 | 346 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 131 | 245 | IPR005175 | - | |
| Car06g00971 | 346 | ProSiteProfiles | PPC domain profile profile. | 126 | 264 | IPR005175 | - | |
| Car06g00971 | 346 | MobiDBLite | consensus disorder prediction | 271 | 309 | - | - | |
| Car06g00971 | 346 | MobiDBLite | consensus disorder prediction | 18 | 107 | - | - | |
| Car06g00971 | 346 | MobiDBLite | consensus disorder prediction | 328 | 346 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car06g00971 | Car15g01061 | CCT | |
| Car06g00971 | Car15g01061 | ECH | |
| Car06g00971 | Car16g00986 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car02g00752 | Car-Chr2:5508278 | Car06g00971 | Car-Chr6:7448183 | 5.07E-79 | dispersed | |
| Car06g00668 | Car-Chr6:3979908 | Car06g00971 | Car-Chr6:7448183 | 3.30E-76 | dispersed | |
| Car06g00971 | Car-Chr6:7448183 | Car16g00986 | Car-Chr16:8368895 | 1.14E-87 | dispersed | |
| Car14g01784 | Car-Chr14:13966301 | Car06g00971 | Car-Chr6:7448183 | 0 | wgd | |
| Car15g01061 | Car-Chr15:8352036 | Car06g00971 | Car-Chr6:7448183 | 9.87E-96 | wgd | |
| Car02g01272 | Car-Chr2:8526097 | Car06g00971 | Car-Chr6:7448183 | 4.50E-89 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car06g00971 | - | - | cpep:111801216 | 570.466 |