Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01042 ATGGGTTCTGTGGGAAACTCAAATCAATGGCAGCCATATGCATACAGGGACTGTTCTTTAGAGATTTGCAGCATATATTGCCCTCAGTGGTGTTACATCATCTTCCCACCACCTCCACCTTTTGGCTATGGAGCCAATAGCGATTCTGGCACTGATTTCTCCCCTCTTATCATAGCCATCATTGGAATCTTGGCCAGCGCCTTCATTTTGGTAAGCTACTACACCATCATCTCCAAGTATTGCAGGAACAGAGCTACCACCTCCAACTCCAACATGGAAATGGATGATGAAGAAAATCTTTCTCAAATCCGCCATGAAAACCAGCTCCAAGCTCCTCCTCCTCCGGCAGGCCTGGATGAGGCTCTCATCAAGTCCATCACAGTCTGCAAGTACAAAAGAGGAGATGGGTTAGTTGAAGGCACAGATTGCTCAGTTTGTTTGAGTGAGTTTGAAGAAAATGAGAGCTTAAGGCTTCTGCCAAAGTGCAGCCATGCCTTTCATCTTCCTTGTATTGACACATGGCTCAAATCTCACTCAACTTGCCCTCTCTGCCGCTCCAACATCTCACCAATCAATCTTTTCCCACCCCCAACTCAGGAAATTCAAAGAACAGAACATTTAAATTCATATAATTTTCAGTATCAGCACAGAAGCAATGACACAGTAGTTGTTGTGGTGGTTCAAGATTTGCCGGATTTAACAGTCAGCAGCCAAGAAACTGCTGTTTTGGGGCTTGAAAACGATGGTGTTTCTTCCAAGAATCAAAGGCAAAGTTTTGTATCAGATAATCAAGATTCAGAGCCGAGAGACATCATGATTCATCAAATAAGACAAGATGATGCTGTTCAGCCATTTAGAAGGTCAGTTTCCTTGAATTCTTTATCATGGCAAGGGCAGGTTTCTGTTGCTGATATACTGAGAGCCAGTCAAGATAGCGAGGAAGAGGTAGAAGAAGATGAATTACAAATGGGGATTGGATCTTCAAAAGCATTTGTTCAAGAGGATTGCCATTCCAGAGTTTCCAACTTGGAAATGCATAGATCTATCTCAACTGGGAAGCTGGGTTTTACAAATTATGGGAATTGGAAAGGGAAGAGTTGCATCATTCCCGGTTGA 1116 43.28 MGSVGNSNQWQPYAYRDCSLEICSIYCPQWCYIIFPPPPPFGYGANSDSGTDFSPLIIAIIGILASAFILVSYYTIISKYCRNRATTSNSNMEMDDEENLSQIRHENQLQAPPPPAGLDEALIKSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWLKSHSTCPLCRSNISPINLFPPPTQEIQRTEHLNSYNFQYQHRSNDTVVVVVVQDLPDLTVSSQETAVLGLENDGVSSKNQRQSFVSDNQDSEPRDIMIHQIRQDDAVQPFRRSVSLNSLSWQGQVSVADILRASQDSEEEVEEDELQMGIGSSKAFVQEDCHSRVSNLEMHRSISTGKLGFTNYGNWKGKSCIIPG 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7855369 7856484 + Carg06317-RA Car06g01042 150778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01042 371 Pfam Ring finger domain 142 185 IPR001841 -
Car06g01042 371 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01042 Car14g01831 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01042 Car-Chr6:7855369 Car14g01725 Car-Chr14:13632281 1.53E-171 dispersed
Car14g01723 Car-Chr14:13629108 Car06g01042 Car-Chr6:7855369 4.20E-08 dispersed
Car06g01042 Car-Chr6:7855369 Car02g01377 Car-Chr2:9087864 1.16E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01042 - - csv:101222852 579.711