Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01058 ATGGAATGGAAACCAAGATTGCTTTTATATCGATTGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTTTCCCGTCTCTTTTTGCTCTCCGATTCTTCTTCCTCTGCTTCGCTTCTGCAAGTTTCTTGCGGTTCCTCGTTCGATCCTCCCTCTCCTGCCGCTGTTCGCCGTTCCGTCTTCCGCCAGAAAGGCTGTTGGAATGAGCTTTCAAAGTAGAAATGATCTACAGGAATGGAGTGCAAGAGTTGTTGAGCGAGGAACAGTAATGGACTTCGACCTAAATTGCCCACCTCCAGATGAGTGCATTGATCCAACTGGTCCTCATCAGGAAGCAACACAGTACTACAATCATTACCAAGGACAAGCTATGGACAATCCCGAGTTTGTTGACGAGGACATTGCTATAATCTCCCCTAGGAAATTTGCTGAGGCCAGGAAGAACTTTCGACGAAACCACTTTGAGAGTAGCTGTGGTGTTGCCATTAGACGTAATGGTGCCTTCTCAGATTTAACGAGTTTGGCCCCTTTTACAATTTGGCCGCCCCTTACAGACCGCAATAACGTATCTATACAAGAACAAACGATTCACAACTTGGACCTTTGCTTAAGCTGCGAAAGCAGTAGTAAAGCCACAAAGGCAACAATTGACACAGACATCCCTTCTGCACTTGCACAAACTAGCAGCAGCCTCCCACCTGCAGCAGCCTCGGGTTTGCGGTGCGCGATCTGCATAGAAGCATTGGTTGAAGAAACAACAACCAAATGCGGGCACGTTTTCTGCAAGAGTTGCATCGAAACAGCCATCGCTACCCAGCACAGATGTCCTATATGTCGGCGTAAGCTTCGAAAACGAGATATTATCCGAATTTATCTACCGTTTTGA 891 47.92 MEWKPRLLLYRLPPPPPPPPPPPPPFPVSFCSPILLPLLRFCKFLAVPRSILPLLPLFAVPSSARKAVGMSFQSRNDLQEWSARVVERGTVMDFDLNCPPPDECIDPTGPHQEATQYYNHYQGQAMDNPEFVDEDIAIISPRKFAEARKNFRRNHFESSCGVAIRRNGAFSDLTSLAPFTIWPPLTDRNNVSIQEQTIHNLDLCLSCESSSKATKATIDTDIPSALAQTSSSLPPAAASGLRCAICIEALVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRKRDIIRIYLPF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7938715 7942971 - Carg06301-RA Car06g01058 150794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01058 296 ProSitePatterns Zinc finger RING-type signature. 258 267 IPR017907 -
Car06g01058 296 Pfam Zinc finger, C3HC4 type (RING finger) 242 280 - -
Car06g01058 296 ProSiteProfiles Zinc finger RING-type profile. 243 281 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01058 K22651 RNF4; E3 ubiquitin-protein ligase RNF4 [EC:2.3.2.27] - mcha:111016128 363.614
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01058 Car-Chr6:7938715 Car14g01705 Car-Chr14:13540030 3.53E-91 dispersed
Car19g00134 Car-Chr19:1176327 Car06g01058 Car-Chr6:7938715 6.75E-26 wgd
Car02g01429 Car-Chr2:9356407 Car06g01058 Car-Chr6:7938715 1.93E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g943 . . . . . . . . . . . Cma14g01904 Car06g01058 . Sed02g1522 Cpe08g00408 Cpe03g01604 Bhi01g00204 Tan10g0502 Cmetu06g0591 . Hepe05g1772 . Lcy11g1787 . . . . . . . . . . . . . . Cme06g00371 . . . . . . . . . Cmo06g01242 Cmo14g01958 . . . . . . . . . . . . . Cla05g00335 Cam05g0367 Cec05g0371 Cco05g0372 Clacu05g0362 Cmu05g0347 Cre05g0411 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013959 0 1 0 0 0 1 1 1 1 0 1 1 2 1 1 2 1 0 2 1 0 1 1 1 1 0 0 2 1 0 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01058 Car_Chr06 FPKM 0.0 0.21519 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.051502
Car06g01058 Car_Chr00 FPKM 0.068779 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.372348 0.376249