Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01070 ATGGGTAGCGGAGAAAAGGTCTTCACCTTGAAGGAAGTCGCTGAGCACAACAATCACAAGGACTGTTGGCTCATCATTAGTGGCAAGGTATATGACGTGACCAAATTCTTAGATGACCATCCTGGAGGTGATGATGTTTTGTTATCAGCCACAGGAAAAGATGCAACGGACGATTTTGAAGATGTGGGGCACAGTGACAACGCAAGAGAAATGATGGATCAATACTATGTTGGAGAGATTGATGGTTCGACAATTCCGAAGAAGGTCGCATACACGCCTCCGAAACAGCCTCATTACAATCAGGACAAGACGTCGGAGTTCATCATCAAGCTCCTCCAGTTCCTCGTCCCGCTTGCAATTTTGGGATTGGCAGTTGCCTTACGTTTCTACACTAAACAAGCTTGA 405 45.93 MGSGEKVFTLKEVAEHNNHKDCWLIISGKVYDVTKFLDDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDGSTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVALRFYTKQA 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8049560 8052741 + Carg06289-RA Car06g01070 150806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01070 134 Gene3D - 3 84 IPR036400 -
Car06g01070 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 91 IPR036400 -
Car06g01070 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Car06g01070 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Car06g01070 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Car06g01070 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Car06g01070 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Car06g01070 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Car06g01070 134 SMART Cyt_b5_2 8 81 IPR001199 -
Car06g01070 134 PANTHER CYTOCHROME B5 1 132 - -
Car06g01070 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Car06g01070 134 PANTHER CYTOCHROME B5 1 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01070 K23490 CYB5; cytochrome b5 - csv:101214209 273.092
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01070 Car-Chr6:8049560 Car15g00942 Car-Chr15:6720301 1.47E-66 dispersed
Car05g00397 Car-Chr5:2259404 Car06g01070 Car-Chr6:8049560 1.34E-33 transposed
Car14g01692 Car-Chr14:13456992 Car06g01070 Car-Chr6:8049560 2.01E-94 wgd
Car17g00096 Car-Chr17:556509 Car06g01070 Car-Chr6:8049560 1.48E-74 wgd
Car19g00129 Car-Chr19:1153633 Car06g01070 Car-Chr6:8049560 5.31E-64 wgd
Car02g01436 Car-Chr2:9379656 Car06g01070 Car-Chr6:8049560 1.90E-66 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car02g00943 CST 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Car15g00942 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.1e-56 216.5
Car14g01692 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.6e-52 202.6
Car06g01070 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Car17g00096 . 1 133 NADPH P450 reductases AT5G53560 63.2 7.6e-47 183.7
Car02g01436 . 6 131 NADPH P450 reductases AT5G53560 63.5 4.6e-44 174.5
Car19g00129 . 42 169 NADPH P450 reductases AT5G53560 63.3 1.0e-43 173.3
Car06g01070 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car14g01692 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car17g00096 . 1 133 NADPH P450 reductases AT5G48810 63.0 1.0e-46 183.3
Car19g00129 . 40 170 NADPH P450 reductases AT5G48810 62.4 5.7e-45 177.6
Car02g01436 . 6 132 NADPH P450 reductases AT5G48810 62.0 3.7e-44 174.9
Car02g00943 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Car15g00942 CST 1 134 NADPH P450 reductases AT5G48810 57.4 1.8e-43 172.6
Car14g01692 . 22 133 NADPH P450 reductases AT2G32720 84.8 8.7e-51 196.8
Car06g01070 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Car17g00096 . 22 133 NADPH P450 reductases AT2G32720 76.8 8.4e-46 180.3
Car02g01436 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.8e-41 165.2
Car19g00129 . 59 170 NADPH P450 reductases AT2G32720 70.5 1.8e-40 162.5
Car02g00943 CST 22 133 NADPH P450 reductases AT2G32720 66.1 5.3e-40 161.0
Car15g00942 CST 22 133 NADPH P450 reductases AT2G32720 64.3 4.5e-39 157.9
Car07g01094 . 2 281 NADPH P450 reductases AT5G17770 81.1 2.5e-132 468.8
Car03g00161 CCT 2 281 NADPH P450 reductases AT5G17770 80.7 6.1e-131 464.2
Car06g00039 CCT 2 280 NADPH P450 reductases AT5G17770 77.5 1.1e-124 443.4
Car20g00007 . 1 253 NADPH P450 reductases AT5G17770 68.5 5.0e-101 364.8
Car02g00943 CST 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Car15g00942 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.1e-56 216.5
Car14g01692 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.6e-52 202.6
Car06g01070 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Car17g00096 . 1 133 NADPH P450 reductases AT5G53560 63.2 7.6e-47 183.7
Car02g01436 . 6 131 NADPH P450 reductases AT5G53560 63.5 4.6e-44 174.5
Car19g00129 . 42 169 NADPH P450 reductases AT5G53560 63.3 1.0e-43 173.3
Car06g01070 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car14g01692 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car17g00096 . 1 133 NADPH P450 reductases AT5G48810 63.0 1.0e-46 183.3
Car19g00129 . 40 170 NADPH P450 reductases AT5G48810 62.4 5.7e-45 177.6
Car02g01436 . 6 132 NADPH P450 reductases AT5G48810 62.0 3.7e-44 174.9
Car02g00943 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Car15g00942 CST 1 134 NADPH P450 reductases AT5G48810 57.4 1.8e-43 172.6
Car14g01692 . 22 133 NADPH P450 reductases AT2G32720 84.8 8.7e-51 196.8
Car06g01070 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Car17g00096 . 22 133 NADPH P450 reductases AT2G32720 76.8 8.4e-46 180.3
Car02g01436 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.8e-41 165.2
Car19g00129 . 59 170 NADPH P450 reductases AT2G32720 70.5 1.8e-40 162.5
Car02g00943 CST 22 133 NADPH P450 reductases AT2G32720 66.1 5.3e-40 161.0
Car15g00942 CST 22 133 NADPH P450 reductases AT2G32720 64.3 4.5e-39 157.9
Car07g01094 . 2 281 NADPH P450 reductases AT5G17770 81.1 2.5e-132 468.8
Car03g00161 CCT 2 281 NADPH P450 reductases AT5G17770 80.7 6.1e-131 464.2
Car06g00039 CCT 2 280 NADPH P450 reductases AT5G17770 77.5 1.1e-124 443.4
Car20g00007 . 1 253 NADPH P450 reductases AT5G17770 68.5 5.0e-101 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01070 Car_Chr06 FPKM 0.637534 0.407828 75.887955 79.615654 36.987423 35.087246 40.211124 10.742593 10.400076 12.176705