Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01084 ATGCAGTCGGCGATAATATCTCCGTCTCCACGCGCCGCCCCGTTTATCGCAGTCACACCATCGACCAATATCCAACGAAGGCGTCCCTTCTTTGTTAGAGCCTTGATTTCCAATGTAGAGTCTCCATCGCCCAGTGCCCCCGCCGTTCAAAAGCTCAACAAGTATAGCTCTCGCATTACCGAGCCGAAGTCACAGGGCGGATCTCAGGCGATTCTCCACGGCGTTGGCCTCTCCGATGACGATCTCAGCAAGCCGCAGATTGGCATTTCGTCGGTCTGGTACGAGGGAAATACCTGCAATATGCACCTGTTGCAGCTCTCCGAGGCTGTCAAATATGGAGTTCAAGCAGCCGGCATGGTTGGCTTTAGGTTCAATACGATTGGCGTTAGTGACGCCATTTCCATGGGAACCAGAGGCATGTGCTATAGCTTGCAGTCGAGGGACTTGATTGCGGATAGCATCGAGACTGTCATGAGTGCTCAGTGGTACGACGGGAATATCTCCATCCCTGGCTGTGATAAGAATATGCCTGGTACAATAATGGCAATGGGAAGGCTGAATCGACCGAGTATTATGGTTTACGGTGGAACCATCAAGCCTGGTCATTTTCAAGGCCATACATACGACATAGTGTCTGCATTTCAGGTATATGGAGAATATGTAAGCGGGTTGATAAGTGATGAACAGAGGAAGAATGTTGTCCGCAACTCTTGCCCGGGCGCTGGGGCTTGTGGTGGTATGTATACAGCTAATACAATGGCTTGTGCTATTGAAACTATGGGCATGTCTCTTCCTTACAGCTCGTCAACGCCCGCTGAGGATCCACTAAAGTTGGACGAATGCCGTTTAGCTGGAAAATATCTTCTGGAATTATTGAAGATGGATTTGAAACCCCGGGATATTATTACAGAAAAATCACTACGAAATGCAATGGTTGTTGTTATGGCTTTGGGTGGTTCCACTAATGCAGTGCTACACTTGATTGCTATAGCAAGGTCTGTTGGTTTGAATTTAACCCTCGATGATTTTCAGAAGGTCAGTGATCAGGTTCCTTTACTTGCCGATCTTAGGCCGAGTGGAACATATGTCATGGAGGATATTCACAAGATTGGAGGAACACCTGCAGTTATTCGCTATTTGTTGGAGAACGAACTTTTAGATGGAGATTGTTTAACTGTCACGGGAAAAACGTTGGCCGAAAACGCTAAACTTTTCCTACCCCTAACTGAAGGGCAGGATGTTATTCAATCTTTGGAGAATCCCATCAAGAAAACAGGGCACCTTCAAATATTATATGGAAATCTTGCTCCCGAGGGTTCAGTAGCTAAGATCACTGGAAAGGAGGGGCTATATTTCTCTGGTCCTGCTCTTGTTTTTGAAGGGGAAGAATCGATGATTGCAGCAATAACAGAGGACCCTTCAAGTTTTAAGGGGAAAACGGTGATCATTAGGGGTGAGGGTCCTAAAGGGGGACCGGGCATGCCTGAAATGTTAACACCGACTAGTGCCATAATGGGGGCTGGTTTGGGGAAGGAAGTGGCATTGCTGACTGATGGTAGATTCTCCGGTGGTTCACATGGCTTCGTTGTCGGTCACATATGCCCTGAAGCATTGGAAGGTGGACCAATTGGGTTGATTCGAAACGGTGATATCATCAACATCGACGTCCAGAACCGGAGTATTGATGTTCAATTATCCGAACAAGAGCTGGAAGAACGAAGAAAGAACTGGATTCCACCTGCATACCGGGCAACCCGAGGCGTTCTCTACAAGTACATCAGGAACGTGCAGGCGGCATCGAAAGGGTGTGTGACGGACGAGTAG 1824 47.81 MQSAIISPSPRAAPFIAVTPSTNIQRRRPFFVRALISNVESPSPSAPAVQKLNKYSSRITEPKSQGGSQAILHGVGLSDDDLSKPQIGISSVWYEGNTCNMHLLQLSEAVKYGVQAAGMVGFRFNTIGVSDAISMGTRGMCYSLQSRDLIADSIETVMSAQWYDGNISIPGCDKNMPGTIMAMGRLNRPSIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGLISDEQRKNVVRNSCPGAGACGGMYTANTMACAIETMGMSLPYSSSTPAEDPLKLDECRLAGKYLLELLKMDLKPRDIITEKSLRNAMVVVMALGGSTNAVLHLIAIARSVGLNLTLDDFQKVSDQVPLLADLRPSGTYVMEDIHKIGGTPAVIRYLLENELLDGDCLTVTGKTLAENAKLFLPLTEGQDVIQSLENPIKKTGHLQILYGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAITEDPSSFKGKTVIIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHICPEALEGGPIGLIRNGDIINIDVQNRSIDVQLSEQELEERRKNWIPPAYRATRGVLYKYIRNVQAASKGCVTDE 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8137225 8142289 + Carg06275-RA Car06g01084 150820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01084 607 Hamap Dihydroxy-acid dehydratase [ilvD]. 54 606 IPR004404 GO:0004160|GO:0009082
Car06g01084 607 Pfam Dehydratase family 84 603 IPR000581 GO:0016836
Car06g01084 607 ProSitePatterns Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 514 525 IPR020558 GO:0003824
Car06g01084 607 ProSitePatterns Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 172 182 IPR020558 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01084 K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] - csv:101217323 1105.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01084 Car14g01681 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01681 Car-Chr14:13371690 Car06g01084 Car-Chr6:8137225 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g860 . . . . . Bpe14g01299 . . . . Cma06g01261 Cma14g01879 Car06g01084 Car14g01681 . Cpe08g00385 Cpe03g01576 . . . . . . . . . . . . . . . . . Cone4ag0387 . . . Cme06g00401 . . . Bda13g00022 . . . . . Cmo06g01270 Cmo14g01927 . . . . . . . . . . . . . Cla05g00366 Cam05g0399 Cec05g0404 Cco05g0404 Clacu05g0394 Cmu05g0379 Cre05g0441 . Csa03g01120 Chy06g00388 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007213 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01084 Car_Chr06 FPKM 9.820464 11.648057 10.918161 9.862136 9.147596 10.463608 10.503852 13.04689 12.802573 14.127021