Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01085 ATGCAGATCATGAAGGAGATGGAGACTGAATGGATCATGGATGTTCCTGATACACCTGATCGGTTAGCTGCCCGACAAATTAATGGCAGACAGTTTATTCAGACGGAGGGTGGTTCATCCTTATCTAATCGTTTGAGAAAGCCTGATTTCATGATGGAAAAGGGGATGAATGGCATGAAGGGTGCAGGGGTGCTTGTCAGTGAAAATGGGCATGATTTGAGATTAGACAGTAGTTCCAAAAATATTCCTGGTGATGATTTTAAGGATCGCAGTAACACCATTATTCTTTCAGCGGGAGAGAATTCTTATGCATCACAAAATCATATTTTACTTAGAAAAGGTGGAAGGGAAAAATATTCATGTCAGGGGCCGAAACCTTTTAATTCCCCTCGTCGCATTGATAAAGGGATAACGATATCCGTCGACACTCCTTCCAAACCTCCTGCTCGTCAAGAAAATACTGTCATTCCAAAAATAAGAGAACCTGATCATAAGTACAGACCTCAGATGGGCTATCCTCATTTTACAGCTAAGGACTGTAAGATGGAGAACACATTGAATGGACAGTCCACACGTTATATGCCAAATGCTCCAAAGAGATCCAGCACGATCATTAAAGGGAAGGAAAAGGCTGTTGAGGAATCAAATAACACTCATAATCGACATGAGAAGCAAGTTTTGGATTCTCACCAGTTTGTTAACTCCCCTAGAGCCACTGGACATAAAAGGCTGGTCAGAAATGGTTGTATATCACCTCATAATATATCAACAAAGACAAAACATTTATCTGAGCAGTGTGAAAAGAGTTCTAGAGGTGTTGACCAGAGCAATTTAGGGAGCATGCCATCAAGCAGTCCATCTTGTCTGATTGATATAAAGGATATAGTTGCGGAAGACAATCGTATTAACAAAGATAAAGGAAAAAGGATTCTGCGTCAACCTTCTACATCACATGATGATGATGATGATATCAAAGTCATTTGTGCATCTAGCAGTGTCGCGGAAAAGGCCGTTGGAGCTAATCCAGTCGGAACTTCCAGGTTAGATACATCTGAATGTTCTGAAGAATTAGGTGGTTGGAGAAGAACACATAATAATTCAAGGAAGGGGATTTTCTTGTCTAATCCATCTGGGAATTCTTTTAAGAAAATAAATAACATTGGAAAACTTTCTAATGGAGAAACTGAAATTGTTATGGAGAGAAAAATCCCTAACAAGAAAGACCAAGGAGCGGAAATTGGTTGTGCTAGAAATGCTGATACAGCTCAAAGGGCTTCTGGCATTGTACCCAAGATAGACCAGACCGTTGGACCAATGCATGCTGAAAGCAAACTCAACAAAAGACGGAAGAAACTTGGATCAACCTCACAAACTAATACTTCATCACACGTTCCAGACGTTGTGTACCTCGATACACCTGGGGAGTCTTCAAATGCAAGGTCAAATAGACTCCAGAGTCAAAGAATTTGTGATAACTTGAATGATGTTATTGAGGTTGATGAGTTGTCACCTGAAATTAGACACCCTGCCTCCCAGACTGTTGGTTGCCCAAATGATGACAGCGAAGATGCTAAGGCAAGACAACTTGAAGCTGACGAGATGTTGGCTCGTGACCTTCAGGAACAACTATATCGGGAGATGCCTGTTGGAGAAGAGATTGATGAACATTTAGCTATGGCACTGCAGCAGGTGGAGAATGGGCATTTTGCACCTCCTTCCCGGCGGACACACAATAGTCAAAGGGGCTCGATGGTAGCACAGGCAAATAGACGCACTCAATCTCAATCTGTACAAAGTTCTTCTAATAGAACACGGACTCGAGTAACCCACTCTGCACGAATGGCACAAATGAGAAATCAATTTTTTGGTGGCTCTCATAGAGTGTCAACTAGACAAAGGAATGTTAATTTTCCTATGCATATGGATTTGGATATGAGACTTGATATATTGGAAGCGCTCGAGGCCGCAGTTGGAGACGTGGAAGATGTGAGAATGAATAGGAGGGGCATTTTGCACATCCAGCGCGATTTTAACGAGAATGATTATGAAATGTTGCTATCCCTCGACGAGAACAATCACCGCCATGCTGGTGCATCGACGAACCGGATTAATAGTTTGCCTCAATCTACGGTTCAGACCGACAGCATGGAAGAAGCTTGTGCAATTTGTCTCGATACACCGACCATTGGAGATGTCATTCGCCATCTACCTTGCTTACACAAATTTCATAAAGATTGTATCGATCCATGGCTACAGAGGCGAACGTCGTGCCCACTTATTAGAACGCTTGATCTCGGGCAGTCAGAAGCGTTAGACTTCAAAGGTGCAATTCTCCATTGGGGAACAGAGCAAAGTTTCCAGCTCGAACGAGTGGGTATGGTTTTGAATGAATCATCAACCGGAGAAGATTCATAA 2415 42.4 MQIMKEMETEWIMDVPDTPDRLAARQINGRQFIQTEGGSSLSNRLRKPDFMMEKGMNGMKGAGVLVSENGHDLRLDSSSKNIPGDDFKDRSNTIILSAGENSYASQNHILLRKGGREKYSCQGPKPFNSPRRIDKGITISVDTPSKPPARQENTVIPKIREPDHKYRPQMGYPHFTAKDCKMENTLNGQSTRYMPNAPKRSSTIIKGKEKAVEESNNTHNRHEKQVLDSHQFVNSPRATGHKRLVRNGCISPHNISTKTKHLSEQCEKSSRGVDQSNLGSMPSSSPSCLIDIKDIVAEDNRINKDKGKRILRQPSTSHDDDDDIKVICASSSVAEKAVGANPVGTSRLDTSECSEELGGWRRTHNNSRKGIFLSNPSGNSFKKINNIGKLSNGETEIVMERKIPNKKDQGAEIGCARNADTAQRASGIVPKIDQTVGPMHAESKLNKRRKKLGSTSQTNTSSHVPDVVYLDTPGESSNARSNRLQSQRICDNLNDVIEVDELSPEIRHPASQTVGCPNDDSEDAKARQLEADEMLARDLQEQLYREMPVGEEIDEHLAMALQQVENGHFAPPSRRTHNSQRGSMVAQANRRTQSQSVQSSSNRTRTRVTHSARMAQMRNQFFGGSHRVSTRQRNVNFPMHMDLDMRLDILEALEAAVGDVEDVRMNRRGILHIQRDFNENDYEMLLSLDENNHRHAGASTNRINSLPQSTVQTDSMEEACAICLDTPTIGDVIRHLPCLHKFHKDCIDPWLQRRTSCPLIRTLDLGQSEALDFKGAILHWGTEQSFQLERVGMVLNESSTGEDS 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8144746 8149640 + Carg06274-RA Car06g01085 150821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01085 804 MobiDBLite consensus disorder prediction 269 285 - -
Car06g01085 804 MobiDBLite consensus disorder prediction 260 285 - -
Car06g01085 804 MobiDBLite consensus disorder prediction 437 483 - -
Car06g01085 804 MobiDBLite consensus disorder prediction 568 609 - -
Car06g01085 804 Pfam Ring finger domain 719 759 IPR001841 -
Car06g01085 804 Coils Coil 205 225 - -
Car06g01085 804 MobiDBLite consensus disorder prediction 572 609 - -
Car06g01085 804 MobiDBLite consensus disorder prediction 452 466 - -
Car06g01085 804 ProSiteProfiles Zinc finger RING-type profile. 720 761 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01085 - - - csv:101205482 1094.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01085 Car-Chr6:8144746 Car15g00107 Car-Chr15:634392 2.55E-13 dispersed
Car14g01680 Car-Chr14:13364029 Car06g01085 Car-Chr6:8144746 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g854 . . . . . . . . . . Cma06g01262 . Car06g01085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo06g01271 . . . . . . . . . . . . . . . . . . . . . . . Chy06g00389 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008707 0 2 1 1 1 0 2 0 0 1 0 0 2 1 1 2 0 3 2 0 1 1 1 1 1 0 1 6 2 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01085 Car_Chr06 FPKM 40.437931 42.482162 46.765095 51.366699 10.921141 7.926268 12.016566 4.295619 4.830086 4.729514