Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01086 ATGGCTAGGAAAATACATGACACTTTAAGCCAACAATTATACATGGAACGACCAAGAGTTGTTACGGATATCCGAATTACTGCAGATCATGGTGTGAGTGATGTTTGTGTACAGACGGGTGAGGTATTTTCTCCCCAGTTTGTGAGGGATCGAGCTGCTTTAAGAAGGTTGTCGGATGTGAGTGATGGAGATCAACAACAGCAGCCGCAAAAGAGAACAGGTCTTGCTTTAAATCCGAGCAGCCAACTCGTATATGAGGATCTCAGTGGAATTCTTGGACTCAAGAGGATGAATTCTGAAAGCAGTTCAGAATTATCATCAATGCCCGCGAATGCATATGCAGCTGAAAGGGATAACAAGGTTTATCCTAACAGCACAAGCAAATATCAGTGGGAATATAGTGCTACTGGACAAGCATCTGGTGCATATGCTGATGAAATTAACCGAGTTCAATTTGACCCCTCAACACTGGCCTTGTATGCAATGGAATCACCTCATTCATGTTATCCTTGTGGGGCTGGATTGGGAAATTTCCCTGTCACTGGCAAGATGAAATTTCTCTGTAGTTTTGGAGGTAGAATATTACCAAGGCCTAATGATGGGAAGCTTAGATATGTAGGTGGAGAAACACGCATTATATCCATTAGGAAAAACATCTCTTGTGAACAACTTATCAGAAAGACATACGCTGTCTGTAAGTATGTCCACACTATAAAGTACCAGCTTCCTGGTGAAGATCTCGATTCACTTATCTCTGTTTGTTCTGATGAGGATCTTCATCATATGATTGAGGAATATCATGAGCTGGAAAACGCAGGGAGTTCTCAAAGACTCAGAATAATTCTTGTTTCTACAAATGATTGTTGTGAGAGTCCTACTTCTATTGAAGGAAGGGTGGTTCAACCAATTGATGTTGATTATCAATATGTTGCGGCTGTAAATGGTATGCTAGACCCAAGTCTTCAAAGGAGCTCTAGTGGACAGAGTTTCACAAGTCAGACTAGCCAGGTGGGAACCATCTCAGATCCTAGTCCCAATTTTTGTACTATTTCTTCACATGCTACAGACTTAAAAGATGCCAATTCACCTATACCAAATTTGGCAGGAATGTTTCCTAGACCTGGTGGTCAATTGTTAATACCCATTCAAACCCCACGCAAGTCCTTTAATCAAACACCTTTATTTTCTCCGGTTACAGTAAAGCAAAAAGATTTTAAGAACGTGGATCCAACATACGCAGAAGATGCTAGAAACTTCACTCCATTTGTTGCAGAAAAACGTCCATGTGATACGGTTTATTATGTCGATGCAATAGGCCGTCACAATAACCTTTACCATGGTTCTCCGCTGATGAATTATCATCATGACAAATCTACAGGGGAAACTGATGAGAAATACAAAGTTCATGATGTTCATTTCCCACAAAGCTCCAGCGAAGATTTTGTGCCTGCAACTTACTGGGATCAAAGTGATACACATTCAATCAAGACTCTGCTCAAGGAACGGGCAGTTAATTATGAACAGCTATACTCGGATGCCGAATATTTGATGCAGTTAAGATCTGGAACCACCCACATGAGACAAACAATGATGCATTCACATTCTGAGCCCCTACTAAAGGAACAGGATCAAAAGTTGAAACATGGAGGAGCCTATCCACTGAACTCATTCAATGATAGTGATCAATTATATTCAATGGCAATGTCAAGTTCCTTTCAGGATTTCCAAACGATATGGAAACAGAGAGTTGGCGGGGAATTTCAAGATGCCAAGTATGAGAAACATGGAAAGTTGGCGTCTGGTAGTGAGAATGAAGGATATGAAGAATGCAATTTTGATGAAAAAAAGGTTAATTTCAATGGACGTATTTATGTCCCATCACTTAATGGTGATGAAAAATACAAATACTTGCAACATGTTGACTACCAACAAAATGGCTACCCCCCGCTAGAGGTACAAAGCCTTGGAGGCAGAACTTCTGCAGAACGAGGGTTTGAATTAGAAAAATCTGCAGATGTCGTGGATGGCCCCTCCCTCATTTACCATTTAGAAACAACTGCTCCAAAAGTTTTCGAGGAGAGCCAATATTCTGTCGAGGATCAACGAACCACTTCTGATATAGTAAGGAGCCAACCATTTTCTTGCGCATCTTCTGATCTACTGCCTCTTACAACTCAAGCTTTGTGCGACAGAAAGATCATAAATCAGGAACCAACATGGGATAGTTCTGCTTTAGGTAGAGATGTTTCTCTAGGCGATGAGAACTTCGTAACCTGTAATTACCGTAAGGTTGCAGACCGTAGTAGAAAAAAGAGCAATCTTGATGATTCTCTGTTTATCAAATCATCAAATTCAGATGATTTTCATAGCAATGAGGACGTGGGATTGGCTGTAATAGTTGAAGATGTAACTCATAGTATACCTCCCGACATACCCTTAGCTTCTGGAGTTATCCCACGGGTTGAAAATGAGGCCAGTGATGACTCTCCATCTTCAAGAGGACATGATGCTCATATTCCTAGTACAGAAACTGACCATGAGGATGCAGACAGTATTCTTAATTCTAGGGATGAATCAATGAGCGAGGCAGCAATAGCTGAAATTGAAGCCGGCATCTATGGCCTGCAGATCATAAAGAATGAAGATCTTGAAGAACTGCAAGAATTAGGATCTGGGACGTTTGGCACAGTTTTTCATGGAAAATGGAGGGGAACGGATGTCGCTATTAAGAGAATAAAAAAGAGTTGCTTCTCAGGAAGTTTTTCTGAGCAAGAAAGACTGACTAGAGATTTCTGGAGAGAAGCAAGGATTCTATCGACTCTTCACCATCCGAACGTGTTGGCTTTTTATGGAGTGGTTCCTGATGGACCTGATGGAACGTTGGCAACTGTAACGGAGTATATGGTAAACGGGTCATTAAGGCATGTTCTTTTAAGAAAGGATAGAGTGCTTGATCGTCGGAAAAGGCTTATGATTGCAATGGATGCAGCTTTTGGCATGGAATATTTGCATTTGAAAAACATTGTTCATTTTGATCTGAAGTGTGATAATTTGTTGGTCAACTTGAGGGATCCTGAACGACCCATATGCAAGGTTGGAGATTTTGGGTTGTCGAGAATTAAGCGCAACACACTTGTTTCTGGAGGTGTGCGTGGAACTCTCCCATGGATGGCACCAGAATTGTTAGATAGTGGCAGTTCTAAGGTCTCGGAGAAGGTTGATGTTTTCTCATTCGGTATTGCAATGTGGGAGATTTTGACTGGCGAGGAGCCATATGCCAACATGCATTGTGGTGCCATCATTGGTGGAATTGTAAGTAATACTCTTAGACCACCGATCCCTAAACGCTGCGATACCGAATGGAAAAAGCTAATGGAAGACTGTTGGTCACCTGAACCTGCAGCGAGGCCATCGTTCACCGAGATAACGAATAGACTTCGCAGCATGTCGGTAGCGCTCCAGATCAGAAAGAGGCCAATTGTAGGTAGTAGATGA 3495 41.72 MARKIHDTLSQQLYMERPRVVTDIRITADHGVSDVCVQTGEVFSPQFVRDRAALRRLSDVSDGDQQQQPQKRTGLALNPSSQLVYEDLSGILGLKRMNSESSSELSSMPANAYAAERDNKVYPNSTSKYQWEYSATGQASGAYADEINRVQFDPSTLALYAMESPHSCYPCGAGLGNFPVTGKMKFLCSFGGRILPRPNDGKLRYVGGETRIISIRKNISCEQLIRKTYAVCKYVHTIKYQLPGEDLDSLISVCSDEDLHHMIEEYHELENAGSSQRLRIILVSTNDCCESPTSIEGRVVQPIDVDYQYVAAVNGMLDPSLQRSSSGQSFTSQTSQVGTISDPSPNFCTISSHATDLKDANSPIPNLAGMFPRPGGQLLIPIQTPRKSFNQTPLFSPVTVKQKDFKNVDPTYAEDARNFTPFVAEKRPCDTVYYVDAIGRHNNLYHGSPLMNYHHDKSTGETDEKYKVHDVHFPQSSSEDFVPATYWDQSDTHSIKTLLKERAVNYEQLYSDAEYLMQLRSGTTHMRQTMMHSHSEPLLKEQDQKLKHGGAYPLNSFNDSDQLYSMAMSSSFQDFQTIWKQRVGGEFQDAKYEKHGKLASGSENEGYEECNFDEKKVNFNGRIYVPSLNGDEKYKYLQHVDYQQNGYPPLEVQSLGGRTSAERGFELEKSADVVDGPSLIYHLETTAPKVFEESQYSVEDQRTTSDIVRSQPFSCASSDLLPLTTQALCDRKIINQEPTWDSSALGRDVSLGDENFVTCNYRKVADRSRKKSNLDDSLFIKSSNSDDFHSNEDVGLAVIVEDVTHSIPPDIPLASGVIPRVENEASDDSPSSRGHDAHIPSTETDHEDADSILNSRDESMSEAAIAEIEAGIYGLQIIKNEDLEELQELGSGTFGTVFHGKWRGTDVAIKRIKKSCFSGSFSEQERLTRDFWREARILSTLHHPNVLAFYGVVPDGPDGTLATVTEYMVNGSLRHVLLRKDRVLDRRKRLMIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLRDPERPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDSGSSKVSEKVDVFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPPIPKRCDTEWKKLMEDCWSPEPAARPSFTEITNRLRSMSVALQIRKRPIVGSR 1164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8151950 8157866 - Carg06273-RA Car06g01086 150822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01086 1164 MobiDBLite consensus disorder prediction 58 77 - -
Car06g01086 1164 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1008 1020 IPR008271 GO:0004672|GO:0006468
Car06g01086 1164 MobiDBLite consensus disorder prediction 811 851 - -
Car06g01086 1164 Pfam Protein tyrosine and serine/threonine kinase 885 1146 IPR001245 GO:0004672|GO:0006468
Car06g01086 1164 ProSiteProfiles Protein kinase domain profile. 883 1153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01086 1164 MobiDBLite consensus disorder prediction 826 851 - -
Car06g01086 1164 MobiDBLite consensus disorder prediction 323 342 - -
Car06g01086 1164 MobiDBLite consensus disorder prediction 60 77 - -
Car06g01086 1164 Pfam PB1 domain 199 284 IPR000270 GO:0005515
Car06g01086 1164 ProSitePatterns Protein kinases ATP-binding region signature. 889 914 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01086 - - - cmax:111473634 2269.2
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01086 Car14g01677 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01086 Car-Chr6:8151950 Car18g00264 Car-Chr18:1526836 1.56E-36 dispersed
Car05g00618 Car-Chr5:3666022 Car06g01086 Car-Chr6:8151950 1.42E-24 transposed
Car14g01677 Car-Chr14:13352227 Car06g01086 Car-Chr6:8151950 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g850 . . . . . Bpe14g01297 . . . . Cma06g01264 Cma14g01874 Car06g01086 Car14g01677 . Cpe08g00383 Cpe03g01573 . . . . . . . . . . . . . . . . . Cone4ag0386 . . . Cme06g00407 . . . Bda13g00024 . . . . . Cmo06g01273 Cmo14g01923 . . . . . . . . . . . . . Cla05g00369 Cam05g0402 Cec05g0407 Cco05g0407 Clacu05g0397 Cmu05g0382 Cre05g0444 . Csa03g01125 Chy06g00391 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005538 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88949 PF07714 PK_Tyr_Ser-Thr 7.50E-62 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01086 Car_Chr06 FPKM 17.061781 20.093866 20.15033 18.128403 19.439764 18.59248 21.449253 29.250586 27.973619 29.195053