Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01087 ATGGAAATGGCGGAATCTGGAGGATGGATTCGGTTGTTTCTTCTCGTGGTGTTCATGTTGTTCGTCGAAACAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTGAGAATCGAGCAACCGAGATATTGCGGAGCTCAAGCAATGCGTCAATGGCAGAGAGGTTGGAGGACGTCGAGGCTCTAGGTAATAAGCATGCCGTGGACAACCCTGAAGAGGTCGCTGCTGCGGTTGACATGAGCATACGCAATGCCACTGCAAGGAGGGAGCTTGGATTCTTCTCGTGTGGAACCGGCAATCCCATTGATGATTGCTGGCGTTGCGACCCCAATTGGCAACAGAACCGCAAACGTCTTGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATCGGTGGTCGCGACGGTCGATACTATGTCGTCACTGATTCCGGCAACGACAACCCTGTCAGTCCAAGGCCTGGCACTTTACGACATGCCGTCATCCAAGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAACTGATCATGAACAGTTTCAAGACAATTGACGCTCGTGGAACCAATGTTCACATTGCTAATGGTGCTTGCATCACCATCCAGTTTGTGACTAATGTTATTGTCCATGGTCTAAATATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGAGATGCCATTTCCATTTTTGGGTCAAGTCATATTTGGATCGATCATAATTCACTCTCTAACTGTGCTGATGGCCTTGTTGATGCTGTCATGGGATCCACTGCAATTACAATCACCAACAATTACTTCACCCACCACAATGAGGTAATGTTATTGGGACATAGTGATTCATACGTTAGGGATAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACATGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGGGGTAGTGCAAATCCTACTATCAATAGCCAGGGTAACAGATATGCTGCACCAACCAACCCTTTTGCAAAAGAGGTTACCAAGAGGGTTGAGACAGCTGAATCTGAGTGGAAAAACTGGAATTGGAGATCAGAGGGAGACCTATTGATGAATGGTGCCTTTTTCACTCCGTCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCTAGTTTGGGAGCTAAATCCTCATCCATGGTTGCTTCCATAACAGCCAACGCCGGTGCACTTAACTGCCGACGAGGTCACGCCTGCTAG 1344 47.69 MEMAESGGWIRLFLLVVFMLFVETIARVPKEIPEIENRATEILRSSSNASMAERLEDVEALGNKHAVDNPEEVAAAVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRYYVVTDSGNDNPVSPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESEWKNWNWRSEGDLLMNGAFFTPSGAGASASYARASSLGAKSSSMVASITANAGALNCRRGHAC 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8171712 8175910 + Carg06272-RA Car06g01087 150823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01087 447 Pfam Pectate lyase 184 362 IPR002022 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01087 Car17g00103 CCT
Car06g01087 Car08g00910 CCT
Car06g01087 Car17g00103 ECH
Car06g01087 Car08g00910 ECH
Car06g01087 Car14g01674 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02458 Car-Chr4:19559525 Car06g01087 Car-Chr6:8171712 0 dispersed
Car06g01087 Car-Chr6:8171712 Car13g00617 Car-Chr13:7884129 0 dispersed
Car14g01674 Car-Chr14:13329725 Car06g01087 Car-Chr6:8171712 0 wgd
Car17g00103 Car-Chr17:607458 Car06g01087 Car-Chr6:8171712 0 wgd
Car19g00112 Car-Chr19:937841 Car06g01087 Car-Chr6:8171712 0 wgd
Car02g01451 Car-Chr2:9460031 Car06g01087 Car-Chr6:8171712 0 wgd
Car06g01087 Car-Chr6:8171712 Car08g00910 Car-Chr8:6115148 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01087 K01728 - csv:101218188 840.491