Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01101 ATGGCTGGTCAAGTAAATCTAGCGGTTGGGTGTCTTGTTTGGATTGAGGATCCTGAGGTAGCCTGGATAGATGGGGAAGTAGTGGAAGTTAATGGTCAAGATATCAGAGTACTCTGTTCATCAGGAACTACTGTTGAGGCCAAATCATCAAATGCCTATCCAAAGGATCCTGAATTTCCATCATGTGGTGTGGATGATATGACAAAACTAGCTTATTTACACGAGCCAGGACTGCTACAGAACTTGAAATGTCGTTATGATGTTAATGAAATTTATACCTATACTGGGGGTATACTAATAGCCGTAAATCCTTTTCGAAGACTTCCTCATTTATATGATAATGGCATAATGCAACAATATAAAGGGGCAGATTTAGGTGAGCTGAGCCCGCATCCCTTTGCCATTGCAAATTCTGCATATAGACAGATGATTAATGAGGGTATAAGCCAGTCAATTTTAGTTAGCGGGGAAAGTGGAGCTGGTAAAACGGAGAGTACAAAGATGCTTATGCGCTATCTTGCCCATGTTGGAGGGAGAGATGGAGGGAAGTCTGCAACTGGTGAACGCTCTGTAGAGCAGCAAGTACTAGAGTCCAACCCTGTTCTAGAAGCATTTGGCAATGCAAAGACTGTTAGAAACAATAATTCCAGTCGGTTTGGTAAATTTGTGGAGATCCAATTTGACCGAAGTTGGAGAATTTCTGGAGCTGCTATTAGAACTTATTTATTAGAACGTTCCCGTGTTTGCCAAGTGTCTGATCCTGAGAGGAATTATCATTGCTTTTATATGCTTTGTGCATCAACAGAGGAAGTTGAAAAGTATAAGTTAGGGAATCCAAGAACATTCCATTATCTTAATCAATCTAATTGCTATGAACTTGATGGACTGGACGATTCCAAGGAATATACTTCTACTAGAGAAGCTATGGATGTCGTTGGAATAAGTACAGCTGAGCAGGATGCTATATTTCGAGTGGTAGCTGCAGTACTTCATTTGGGCAATGTTGAATTTGCAAAGGGGAAGGATGCGGATTCCTCTGAACCTAAGGATGACAAATCTCGGTTCCATCTCAAAATGGCAGCAGAGCTATTCATGTGTGATGAGAAGGCTCTTGAAGATTCAATGTGTACTCGTGTGATAGTTACACGTGATGAAACCATAACCAAATGTCTCGATACAGTATCTGCAACTCTTAGTAGGGATGCTTTGGCAAAAATCGTATATTCAAGATTATTTGATTGGATTGTTGATAAGATTAATAACTCAATTGGCCAAGATCGTGATTCAAAACACTTAATCGGGGTTCTGGATATCTATGGATTCGAGAGTTTCAAGACAAACAGGCAAGAGTTTTCGTCTAAGTATCAATACATTGCTAGGGAAAGACCTTACAAATTGGCATCAGATCATAATCTTGGGAGTTTTGAGCAATTTTGTATTAATCTGACAAATGAGAAATTGCAGCAACATTTCAACCAGCATGTGTTCAAGATGGAGCAAGAAGAATATACAAAAGAAGAAATTAACTGGAGTTATATTGAATTTATTGATAATCAGGATGTTCTTGATCTCATTGAGAAGAAACCTGGTGGCGTCATTGCGCTTCTGGATGAGGCTTGCATGTTTCCGAGATCCACACATGAGACTTTTGCTCAGAAACTATATCAAACTTTTAGGGACCATAAGCGATTTAGTAAGCCTAAATTGTCACGAACTGACTTCACAATTTGTCATTATGCTGGCGATGTTACGTACCAAACTGAACTCTTCTTGGACAAAAACAAAGATTATGTTGTTGCGGAGCATCAAGCACTGTTGGGTGCTTCTAAGTGCTCCTTTGTTGCAGGGCTATTCCCCCCTTTACCTGAAGAAACCTCCAAATCATCCAAGTTCTCATCAATAGGGACTAGATTTAAGCAACAACTTCAAACTTTGCTCGAGACACTAAATGCTACTGAGCCACACTACATACGCTGTGTAAAGCCAAACAATCTTCTTAAACCATCCATCTTTGAGAATAATAATGTTTTACAGCAGCTCCGATGTGGGGGAGTCATGGAAGCAATCAGGATCAGTTGTGCTGGATATCCCACTAGGAAGACGTTTGATGAATTTATTGGTCGGTTTACTATCTTGGCACCTGATGTTTTGAAGGGGAGCTCTGATGAAGCCAATGCGTGTAAGAAGCTTTTGGAGAAAGTTAACCTTAATGGGTATCAGATTGGTAAAACCAAAGTGTTTCTTAGGGCTGGTCAAATGGCACAATTAGATGGCTGCCGAACTGAGGTCTTGGGAAGATCTGCTAGTGTTATCCAAAGGAAAGTTCGCTCATATTTGGAACGGAATCGTTTTATTTCGTTGCGGTTGGCTGCTATACAAATTCAAGCACTTTGTAGAGGGGAAGTTGCACGCCAGCAGTATGAAAACATCAGAATGGAAGCTGCTTCTATCAAAATCCAAAAGTATTGGCGCATGTGTTCTGCCCGAAGTTCCTATAAAAGATTGCGCTCTTCAGCTGTAGCTATTCAGGCTGGTATCCATGGCATGGTTGCTCGTAAAGAGCTCAAGTTCAGGAGGGATACAAGAGCTGCAATTATCATTCAGAGTCGATGTCGGCAATACTTGGCCCGTATGCATTATTTAAGGTTAAAAAAAGCTGCGATTACCACTCAATGTGCTTGGAGAGCAAGAGTTGCACGCAGAGAACTTCGCAAGCTTAAAATGGCTGCTAAGGAAACTGGCGCTCTCCAAGCTGCCAAAGATATGTTGGAAAAGCAAGTGGAAGAACTAACATTGAGATTGGAGCAAGAGAAACAAATGAGGGCTGACATGGAGGATGCCAAGACTCAAGAAAACACAAAATTGAAGTCTGCTTTGGAAGAAATACAAACTCAATTTCAGGAAACGAAAGCACTGCTTATTGAGGAACGTGAAGCTGCAAAGAAAGTAGTTGAGGAACGTGAAGCTGCAAAGAAAGTAGTTGAGGAAATCCGTGAAGCTTCAAAGAAAGTAGTTGCGGAAGTCCCAATAGCTGCAAAGAAAGCAGTTGAGGAAGTCCCAGTAGCTGCAAAGGAAGTAGTTGAGGAAGTCCCAGTAGCTGCAAAGAAAGTAGTTGAGGAAGTCCCAATAGCTGCAAAGGAAGTAGTTGAGGAAGTCCCAGTAGCTGCAAAGGAAGTAGTTGAGGAAGTCCCAGTAGCTGCAAAGGAAGTAGTTGAGGAAGTCCCAGTGAAGCAAGTAGTCGAGGAAGTCCCAGTAGCTGCAAAGGAAGTTGTTGAGGAAGTCCCAGTAGCTGCAAAGAAAGTAGTTGAGGAAGTCCCAGTAGCTGCACAGAAAGTAGTTGTGGAAGTCCCAGTCATACAGGAGGTTCCAGTTGTTGATCATGAGCTTATCAATAAGCTAACTACTGAAAATGAAGAACTTAAGGCTCTTGTTAGTTCTTTGGAAAGTAAAATTGATGAAACAGAAAGGAAATTTGAGGAAAGTAACAGACTTAGTGAAGAGCGGCTGAAGCAGGCTACGGAGGCAGAGTCAAAGATAATAGAATTAAAGACTGCCATGCAAAGGCTTGAGGAAAAGTTATCTGACTTGGAAACTGAGGACCAAATTCTGAGGCAGCAAGCACTGCAAAAGCCTCCTTCAAGAAAAATGTCTGGACATATAACAATGCAGCCTTTGGAGAATGGCCACCTTGAATTATTAAGCAATGCACCATCAAAAAAGTATGGTACCGATGCTGATGCAAAATTGAGGAGATCCCAAATTGAAAGGCAGAACGAAGGCATGGATGCTCTATCGAAATACTTAACACGGGATCTTGGGTTCAGTGAGGGAAAACCTGTTGCTGCTTTTGTAATTTATAAATCTCTTCTCCATTGGAGATCATTTGAAGCAGAAAAAACAAGTGTATTTGATCGTCTTATTCAGATAATTGGTTCTGCAATTGAGAATCAGGATGATTATGATCACATGGCTTATTGGTTATCCAACACAACTACATTGTTGTTTCTTCTTCAAAAGAGTTTAAAAGCCACACCAAGAAAGCCTCCCACCCCGACATCATTGTTTGAGCGAATGACCCAAGGGTTTCGTTCATCTTCTGCCAACCTTCCAGTTGGCACCCTTGATGTTGTGCGGCAAGTTGAAGCCAAATATCCTGCTCTACTTTTCAAGCAGCAGCTAACAGCGTATGTAGAAAAGATATATGGAATAGTTAGAGACAACCTGAAGAAGGAACTATCGCCGTTGCTTTCAACTTGTGTCCAATTTTGTAACTTGGATCAAAGTAGCAGCTCTGATGTGTGTTTGATGACATGCAGGCTCCCAAAACTTCGGAAGAGAATATTGAGGAATCATCTGACGAGGCAAAGAGTAGCAGCCTTCTCAATAGTTCATGGGGCAGCATCATCCATCACCTTAATCATCATCTTAGTAGATTGCAGACGAACTTCGTATGTGATAATTTCTGTTGGAGCTCAAGTGAATAATATATCATTTCACTGTGAACTTATGCTAAGCACTTTACAGGTGCCTTCCGTTTTGGTCCAGAAGATATTCACTCAGGTTTTTTCATACATCAACGTACAGCTTTTCAATAGTCTTCTACTTCGTCAAGAGTGCTGCACGTTTAGTAATGGAGAATATGTGAAGTCAGGACTTGCTGAGTTAGAGAGTTGGTGTACCCAAGCCAAAGAAGAGTATGTCGGGTTATCTTGGGATGAGCTAAAACCAGTGAGGCAAGCTGTTGGATTCTTGGTTATTCACCAGAAGTCTAGAATATCTTATGATGAAATTACAAATGACCTCTGTCCAATATTAAGCGTTCAGCAGCTTTATAGAATATGTACTCTTTATTGTGACGACAATTACAATACCAGAAGCGTAGCTGAAGAGGTTATTTCTAGCATGAAGGTTTTGATGCCCGAAGATACCAATGATGAAGACAATAATTCCTTTTTGTTGGATGACAATTCCAGCATACCTTTCTCAGTCGATGACATATCCAGTTCCTTGCAAGATAAGAATTTTCAAGATATTAAGCCTCCAGCAGAACTACTTGAGAATCCGGTCTTCCAATTTTTACAGGAATAA 5088 40.98 MAGQVNLAVGCLVWIEDPEVAWIDGEVVEVNGQDIRVLCSSGTTVEAKSSNAYPKDPEFPSCGVDDMTKLAYLHEPGLLQNLKCRYDVNEIYTYTGGILIAVNPFRRLPHLYDNGIMQQYKGADLGELSPHPFAIANSAYRQMINEGISQSILVSGESGAGKTESTKMLMRYLAHVGGRDGGKSATGERSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDRSWRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCASTEEVEKYKLGNPRTFHYLNQSNCYELDGLDDSKEYTSTREAMDVVGISTAEQDAIFRVVAAVLHLGNVEFAKGKDADSSEPKDDKSRFHLKMAAELFMCDEKALEDSMCTRVIVTRDETITKCLDTVSATLSRDALAKIVYSRLFDWIVDKINNSIGQDRDSKHLIGVLDIYGFESFKTNRQEFSSKYQYIARERPYKLASDHNLGSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFIDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAQKLYQTFRDHKRFSKPKLSRTDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLGASKCSFVAGLFPPLPEETSKSSKFSSIGTRFKQQLQTLLETLNATEPHYIRCVKPNNLLKPSIFENNNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFIGRFTILAPDVLKGSSDEANACKKLLEKVNLNGYQIGKTKVFLRAGQMAQLDGCRTEVLGRSASVIQRKVRSYLERNRFISLRLAAIQIQALCRGEVARQQYENIRMEAASIKIQKYWRMCSARSSYKRLRSSAVAIQAGIHGMVARKELKFRRDTRAAIIIQSRCRQYLARMHYLRLKKAAITTQCAWRARVARRELRKLKMAAKETGALQAAKDMLEKQVEELTLRLEQEKQMRADMEDAKTQENTKLKSALEEIQTQFQETKALLIEEREAAKKVVEEREAAKKVVEEIREASKKVVAEVPIAAKKAVEEVPVAAKEVVEEVPVAAKKVVEEVPIAAKEVVEEVPVAAKEVVEEVPVAAKEVVEEVPVKQVVEEVPVAAKEVVEEVPVAAKKVVEEVPVAAQKVVVEVPVIQEVPVVDHELINKLTTENEELKALVSSLESKIDETERKFEESNRLSEERLKQATEAESKIIELKTAMQRLEEKLSDLETEDQILRQQALQKPPSRKMSGHITMQPLENGHLELLSNAPSKKYGTDADAKLRRSQIERQNEGMDALSKYLTRDLGFSEGKPVAAFVIYKSLLHWRSFEAEKTSVFDRLIQIIGSAIENQDDYDHMAYWLSNTTTLLFLLQKSLKATPRKPPTPTSLFERMTQGFRSSSANLPVGTLDVVRQVEAKYPALLFKQQLTAYVEKIYGIVRDNLKKELSPLLSTCVQFCNLDQSSSSDVCLMTCRLPKLRKRILRNHLTRQRVAAFSIVHGAASSITLIIILVDCRRTSYVIISVGAQVNNISFHCELMLSTLQVPSVLVQKIFTQVFSYINVQLFNSLLLRQECCTFSNGEYVKSGLAELESWCTQAKEEYVGLSWDELKPVRQAVGFLVIHQKSRISYDEITNDLCPILSVQQLYRICTLYCDDNYNTRSVAEEVISSMKVLMPEDTNDEDNNSFLLDDNSSIPFSVDDISSSLQDKNFQDIKPPAELLENPVFQFLQE 1695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8259248 8281653 - Carg06257-RA Car06g01101 150837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01101 1695 Coils Coil 920 1003 - -
Car06g01101 1695 ProSiteProfiles IQ motif profile. 860 889 IPR000048 GO:0005515
Car06g01101 1695 Pfam Myosin N-terminal SH3-like domain 12 50 IPR004009 GO:0003774|GO:0005524|GO:0016459
Car06g01101 1695 ProSiteProfiles Myosin motor domain profile. 62 761 IPR001609 GO:0003774|GO:0005524|GO:0016459
Car06g01101 1695 ProSiteProfiles IQ motif profile. 812 841 IPR000048 GO:0005515
Car06g01101 1695 ProSiteProfiles Dilute domain profile. 1304 1641 IPR002710 -
Car06g01101 1695 ProSiteProfiles IQ motif profile. 883 912 IPR000048 GO:0005515
Car06g01101 1695 Coils Coil 1172 1206 - -
Car06g01101 1695 Pfam DIL domain 1517 1619 IPR002710 -
Car06g01101 1695 Pfam IQ calmodulin-binding motif 861 880 IPR000048 GO:0005515
Car06g01101 1695 Pfam IQ calmodulin-binding motif 885 904 IPR000048 GO:0005515
Car06g01101 1695 Pfam IQ calmodulin-binding motif 814 833 IPR000048 GO:0005515
Car06g01101 1695 Pfam IQ calmodulin-binding motif 790 807 IPR000048 GO:0005515
Car06g01101 1695 Pfam IQ calmodulin-binding motif 766 784 IPR000048 GO:0005515
Car06g01101 1695 ProSiteProfiles IQ motif profile. 835 864 IPR000048 GO:0005515
Car06g01101 1695 ProSiteProfiles IQ motif profile. 787 816 IPR000048 GO:0005515
Car06g01101 1695 Pfam Myosin head (motor domain) 64 449 IPR001609 GO:0003774|GO:0005524|GO:0016459
Car06g01101 1695 Pfam Myosin head (motor domain) 473 749 IPR001609 GO:0003774|GO:0005524|GO:0016459
Car06g01101 1695 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Car06g01101 1695 Coils Coil 1130 1164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00475 Car-Chr4:2684918 Car06g01101 Car-Chr6:8259248 5.16E-06 dispersed
Car06g01101 Car-Chr6:8259248 Car17g01260 Car-Chr17:9556230 0 dispersed
Car13g00592 Car-Chr13:7705485 Car06g01101 Car-Chr6:8259248 7.11E-07 dispersed
Car06g01101 Car-Chr6:8259248 Car08g00045 Car-Chr8:251442 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01101 K10357 - csv:101221506 1721.83