Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01107 ATGGCCACCGCCGCCGTCGCCGCCGCCGGAGCCTCCATTTTCACCACCAAGCGCTGGCTCTCTGATGCTCTCCTTACAACCCCATCAGCCCTAATGTTTCCCATCTTGTCCCGCTCTCTTGCCATTGAATCGGGCCCGCTTAGAGCTTTCTCGGAGAGGTGGCGGCCGGCTCTGGGAATTTCCGCCGCCGTTGTGCAGAGAAAGGCGGCTGTGACATTTGGGGTTGAAGAGGGTGTGGCGGATGAGACGGCGGAGGAGGGAGAAGGGCAAGCGGTGGACGGTGGTTCTCCAGTGGAATCCGGGAAAACTAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTTCACAGCTTGCTGATATTGTTCAGGATTATGGGGTCGCCGAGCTCATTGAGGTTCTTTATGACAGGAATACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGCATTGAAGATTGCAATAAAGTCATCGAAAATCTGGATGGAACTGCTTACATGGGCAGACTATTGAGGGTTAATTTCTCAGACAAACCTAAGCCTAAGGGACTTCTTTATCCAGATTCTGAGTATGAACTTTATGTCAGTAACTTATCCTGGTCAGTAACATCTGAAAGTTTGGCACAAGCATTTCAAGAATATGGAAATGTGGTCGGAGCAAGGGTCATCTACGATGACGAGACCGGAAAGTCACGAGGATATGGCTTTGTATCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGCTTGTAATGAATTGGAACTTGAAGGCAGGGTAATACGTGTTAGCTTAGCTCAAGGAAAACAAGCTCAGGGATCTAAGATTTTGATCGTGGGACCTGTTCTTGTTTCTTCTCGATTTTTAGGGTTTAAGGGTTTCGATCAAATGGGGACGCCCTTTCACATTCCGGTCACTGCCGCTCAGGTGGGAACGTACTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTTTGTTCATCAGTTTTATTCTGATGCGAGTACCATGCTTCGTGTTGATGGCCATTTCAGGGAGTCCGCCACTGCAATGCTGCAAATCCATGCTCTTGTGATGTCGCTTAGTTATACCGGGGTTGAGATCAAGACAGCACATTCATTAGAATCATGGAATGGTGGTGTTCTTGTGATGGTTTCTGGATCTGTTCAAATGAAGAACTTCAATCAAATGAGAAAATTTGTGCAAACTTTTTTTCTTGCACCCCAAGAGAAAGGCTATTTTGTTCTGAATGATATCTTTCACTTTGTTGATGAGGAGCCAGTGCACCATTACCCAGCAGTCTTATTAAGTCAGAGCAATCTTGATTCCACCTTGAATGCTCCAACCACAGCTCCTGAGACAGTGCCCAATTACTCACTGAATGGCGCAATCCAGGCCCCGCGAGAGTTTGCAACCCCGGTTGTCAAAGAAAATGGTCACGTCGATAACCGTAAGTTTGTCGAGCAGCAACTGCAGCAAGTTCCCGAGCCAAAAAACATTATAGAGGAAAGTACAGCAGTCGTAAATTCTATCCATCAGAATGCACCAACTGTTTCACCAGATCCTTCCCCTGTTTCTGTTGAAGAACATGCTGAGGAGCCCCAAAAGCAAACATATGCTTCAATTCTTCGAGTTGCTAAAGGACAAGATGCGCCCGCTTCCATTGCTGCTTCTCAGTATCCAGTTAGTAAGAGCACACCATCTGCTTCAGAGAAAAACTACACTCCACCGTCCACCGCCCAGCAATTAACTACAGCTCTCCAAAATAACTCCGAACGGGAACAGACAGGAGGCGAGTTCCCTTCTGTTGATGATGAAGGTGAAATAAAGTCTGTTTATGTAAGAAACTTGCCATCCACTGTGTCTGCTTCAGAAGTTGAGGAGGAATTCAAGCACTTTGGAAAACTCAGTTCTGATGGGGTGGTTATTAGGAGCCGCAAGGTCTATGTTCTTTTTTATCTTTTCAGTGTATTTCACGATGCCTGTCTTGAATTACTCGATTCCCGACTAACTCGTGATTTCCAGGATGTTGGTTTTTGCTATGCATTTGTCAAATTTGAAGACGTCACTGGCGTCCAAAACGCTATCAAGGAAGGGGTGGTAGAGGAAGAGGTAGCTATCACACAGAGTCTTCTAGGGGGCATCATTCTAGCTCTCGGAGTTACAATACAGGAGTTCGAGACGGAAGCGACCATGAGTATATCAGACCGAGAGGTAACGGCTTCTATCGACCTACTACTCGACAGGACAAAGTGA 2274 46.26 MATAAVAAAGASIFTTKRWLSDALLTTPSALMFPILSRSLAIESGPLRAFSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQAVDGGSPVESGKTKLYFGNLPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQGSKILIVGPVLVSSRFLGFKGFDQMGTPFHIPVTAAQVGTYFVGQYYQVLQQQPDFVHQFYSDASTMLRVDGHFRESATAMLQIHALVMSLSYTGVEIKTAHSLESWNGGVLVMVSGSVQMKNFNQMRKFVQTFFLAPQEKGYFVLNDIFHFVDEEPVHHYPAVLLSQSNLDSTLNAPTTAPETVPNYSLNGAIQAPREFATPVVKENGHVDNRKFVEQQLQQVPEPKNIIEESTAVVNSIHQNAPTVSPDPSPVSVEEHAEEPQKQTYASILRVAKGQDAPASIAASQYPVSKSTPSASEKNYTPPSTAQQLTTALQNNSEREQTGGEFPSVDDEGEIKSVYVRNLPSTVSASEVEEEFKHFGKLSSDGVVIRSRKVYVLFYLFSVFHDACLELLDSRLTRDFQDVGFCYAFVKFEDVTGVQNAIKEGVVEEEVAITQSLLGGIILALGVTIQEFETEATMSISDREVTASIDLLLDRTK 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8309294 8319403 - Carg06251-RA Car06g01107 150843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01107 757 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Car06g01107 757 ProSiteProfiles Nuclear transport factor 2 domain profile. 314 428 IPR018222 -
Car06g01107 757 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 266 IPR000504 GO:0003723
Car06g01107 757 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 174 IPR000504 GO:0003723
Car06g01107 757 MobiDBLite consensus disorder prediction 562 603 - -
Car06g01107 757 MobiDBLite consensus disorder prediction 519 542 - -
Car06g01107 757 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 616 730 IPR000504 GO:0003723
Car06g01107 757 Pfam Nuclear transport factor 2 (NTF2) domain 314 428 IPR002075 -
Car06g01107 757 MobiDBLite consensus disorder prediction 559 610 - -
Car06g01107 757 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01107 - - - cpep:111790085 952.199
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01107 Car14g01653 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00003 Car-Chr6:40206 Car06g01107 Car-Chr6:8309294 5.88E-08 dispersed
Car06g01107 Car-Chr6:8309294 Car08g00035 Car-Chr8:169843 2.28E-106 dispersed
Car16g01104 Car-Chr16:9504772 Car06g01107 Car-Chr6:8309294 4.86E-08 transposed
Car14g01653 Car-Chr14:13204521 Car06g01107 Car-Chr6:8309294 1.31E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g785 . . . . . Bpe14g01284 . . . . Cma06g01289 Cma14g01845 Car06g01107 Car14g01653 . Cpe08g00362 Cpe03g01545 . . . . . . . . . . . . . . . . Cone7ag0352 Cone4ag0365 Lsi05g01775 . . . Blo02g00687 . . Bda13g00036 . . . . . Cmo06g01295 Cmo14g01889 . . . . . . . . . . . . . Cla05g00405 Cam05g0442 Cec05g0449 Cco05g0450 Clacu05g0439 Cmu05g0417 Cre05g0479 . Csa03g01165 Chy06g00427 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007215 1 4 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01107 Car_Chr06 FPKM 24.073685 27.49666 32.637203 32.422775 19.302912 19.83095 20.728401 29.579346 28.145344 31.652185