Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01113 ATGAACTGCTCTATCTCCGGCGAGATTCCGGAAGAGCCAGTTGTCTCTAAGAATTCTGGATTACTCTTCGAGAAGCGGTTAATCGAGAGGCACATTTTAGACTATGGGAAATGCCCTGTTACAGGCGAACCTCTTTCCATTGATGACATCGTTCCAATTAAAACTGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGTTTTGGTGCTGTCCAATTTTGCACTGGAGCAACAGTTGCATACAGCCAGACAGGAACTTAGTCATGCCTTATATCAGCATGATGCAGCCTGTCGTGTAATTGCAAGACTTAAAAAGGAACGGGATGAAGCTAGGTCATTACTTGCTCAGGCAGAGAGGCAGATGCCCTTGTCATCAACTTCAATATCATCCAATGCTGCTGTCAATGTTAATGGCAAAAGAGTTAATGAGGATGAGGAATTGGGTCCTGATGGGAAGAAAATACGTCCAGGAATATCAGCCACTGTTATCTCTGAGCTCACAGATTGTAATGCTTCCCTTTCACAACAAAGGAAGAAGCGGCAGATACCTCCTACGTTGGTTCCTGTTGAGGCTTTAGAGAGTTACACCCAGATTTCTAGTCATCCACTTCATAAAACAAACAAACCAGGGATTATATCTCTTGACATCAATCATGAGAAGGATGTCATTGCGACTGGAGGGCTGGACACAAATGCTGTTCTTTTTGGTCGATCATCTGGGGAGATTTTATCTACACTGAGTGGTCATTCAAAGAAGGTAACAAGTGTCAAATTTGTCACCCGAGATGATTTATTCTTGACTGGTTCGGCTGACAAGACTGTCCGTGTATGGCAACCATCTGATGACGGGAACTATAATTGTAGGCACATTTTAAAGGATCACACAGCTGAGGTCCAAGCTGTTACCGTCCATGCTACCAACAACTTCTTTGTTACTGCCTCCCTTGATAACACATGGTGTTTTTATGACCTTGCTTCAGGATTATGCCTAACCCAGGTTGCAGAGGCTTCAGGAACGGAGGGCTACACATCTGCTGCCTTTCATCCTGATGGTCTCATCCTTGGAACCGGCACGTCAGAGGCTCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCTAGATTTGATGGACACGTTGGGGCAGTGACAGCTATATCTTTTTCTGAAAATGGTTACTTCCTTGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAACTTCCGTACATTTGCACCTTATGATTCAGAAACTCCAACAAACTCCGTGGAATTTGATCATAGTGGATCTTACCTTGCAATTGCTGGCTCAGATATAAGAGTTTACCAAGTTGCTAGTGTGAAGTCTGAATGGAATTGCATCAAAACTATTCCAGATTTATCTGGCACAGGTAAAGCAACCTGCCTAAAATTCGGAACGGATGCAAAATACTTGGCAGTCGGATCCATGGATCGAAATCTTCGGATTTTTGGTGTGCCTGGGGAAGACGGCCCGATGGAGACATAA 1566 44.06 MNCSISGEIPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSISSNAAVNVNGKRVNEDEELGPDGKKIRPGISATVISELTDCNASLSQQRKKRQIPPTLVPVEALESYTQISSHPLHKTNKPGIISLDINHEKDVIATGGLDTNAVLFGRSSGEILSTLSGHSKKVTSVKFVTRDDLFLTGSADKTVRVWQPSDDGNYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYDLASGLCLTQVAEASGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETPTNSVEFDHSGSYLAIAGSDIRVYQVASVKSEWNCIKTIPDLSGTGKATCLKFGTDAKYLAVGSMDRNLRIFGVPGEDGPMET 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8338280 8345970 - Carg06244-RA Car06g01113 150849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01113 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 430 IPR001680 GO:0005515
Car06g01113 521 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Car06g01113 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 291 - -
Car06g01113 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 390 423 - -
Car06g01113 521 Pfam WD domain, G-beta repeat 385 421 IPR001680 GO:0005515
Car06g01113 521 Pfam WD domain, G-beta repeat 473 510 IPR001680 GO:0005515
Car06g01113 521 Pfam WD domain, G-beta repeat 299 336 IPR001680 GO:0005515
Car06g01113 521 Pfam WD domain, G-beta repeat 254 290 IPR001680 GO:0005515
Car06g01113 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 345 IPR001680 GO:0005515
Car06g01113 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 389 IPR001680 GO:0005515
Car06g01113 521 Pfam Prp19/Pso4-like 64 129 IPR013915 -
Car06g01113 521 Coils Coil 113 133 - -
Car06g01113 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 291 IPR001680 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01113 Car14g01649 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01113 Car-Chr6:8338280 Car03g00788 Car-Chr3:6546732 6.78E-13 dispersed
Car18g00682 Car-Chr18:7990836 Car06g01113 Car-Chr6:8338280 9.77E-11 transposed
Car14g01649 Car-Chr14:13190148 Car06g01113 Car-Chr6:8338280 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01113 K10599 - csv:101204424 991.49