Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01121 ATGAGAGCAAAGGCCTGGAGGAATGAGCAAATTTTACGCCTCAAGAGTAAATTTAGCAAGATGATAAACTGTATTCGTTCAGGGGATCAATTAAAAGTGGATGAAATGATGCATTCATCAGATTCTCTGGCAACTCGAGACTATTCAGCCAGTGGTTTTTCATCACGTACTGGGGAGGTGGAACCGAAGGTGGATAATGCCAACATTGAAGAAGCTGAATCATCTCTTCGTGAGAGTGGTTATCTGAATTATGAGGAAGCACGCGCTTTACTTGGAAGGCTCGAGTACCAAAAGGGTAACATAGAAGCTGCTCTTCATGTTTTTGAAGGAATAGACATTGTTGCTGTAATTTCCAGGATAAAAGCTTCCATTTCAACGAGATATGAACAAAATAGACGGCAATCACAAAGTGATGTTGTGCCTACTATGTCTATGCATGCCATTAGTTTACTTCTTGAAGCTATTTTTCTGAAAGCAAAATCATTACAGGGTTTAGGAAGGTTTGTAGAGGCAGCAAAAGCTTGCAAACTACTTTTAGACACCGTTGAATCTGCATTACCAGAAGGCTTACCTGAAAATTTCGCTAGTGATTGTAAATTGCAAGGGACGCTAACAAAGGCTGTTGAATTGCTTCCAGAATTGTGGAAATCTGCCGGGTCTCCAGAAGAATCCATCTTGTCATACAGGCGTGCCCTTATTTACCAATGGAATCTAGAAATGGAAACTAGAGCAAAGATAGAAAAAGAATTTGCAATTTTCCTTCTATATAGTGGTTGTGATGCAAGTCCTCCCAATCTCCGTTTGCAGATGGAAAGCTCATTTGTGCCAAGAAATAATATGGAAGAGGCCATTCTTCTGTTAATGGATCTGTTGGGAAAGTATATACATGGATTGGTTGTATGGGACCCATCAATAACAGAGCATCTCTCGTTTGCACTGTCTATTGTTGGGGAATTTGGAGCTCTAGCTAATGAGGTTGAACAATTGCCTCCAGGAACTATAGGAAGGAAAGAGAAGTACTGGACACTAGCTCTTTGTTACTACGGGGAAGGTAAAAGCTTAGTTGCGTTGAACCTTTTGAAGAACTTCTTGAATAACAAAGATAATGTAGACTGCTTACTGGAATTGTTGTTAGCTTCAAAGCTCTGTGGAGAGAATTTGGTTTGTCTCGATGAGGGGGTGACTTACATATTGAGAGTGCTTTCGGAATTGGGTGGTAGATGCATCCAGATGGTTTCTATTGCTAATTGCTTACATGGTGTATTACTGTCAGCCATATCCAAATCAATTGCTTCTGATTCTCTTAAAACTTTGAAGCAATCTGAGGCACTCAAGGCACTACAAACCGCCGAGCAACTGATGAAACAAAGGGATCCATTCATTGTGTATCATCTTTGTCTTGAATATGCTGAACAGAGGAAGCTGGATAATGCTCTATACTACGCAAAACAGCTAGTGAAACTCGAGGCTGGGTCTAGTGTGAAGTCCTACATCCTCTTGGCCAGAATATTGTCTTCCCAGAAACGGTTTGGGGATGCAGAGACTGTAATCAACGCTGCTCTTGAGCAGACAGGGAAGTGGGAACAGGGCGAACTCTTACGAACTAAAGCTAAGCTCCAGATTGCACAGGGCCAGTTAAAGAGCAGTATAGAAACATATACTCATCTTCTTGCTATAATTCGAGTCCGGACTAAAAGTAGTGGAGTTGGAAAGATGCTTTCAAAGGATGTGAGAACATCTGACAGAAGTCTGGAAATAGAAACATGGAATGATTTGGCCAATATTTACACAAGCTTGTCTCAGTGGCGGGATGCTGAGATCTGCCTATCAAAATTGCAGGCAATCAATCCATATTCTGCTTCTAAATGGTATTCCACAGGTTTACTGTATGAGTCTAAGGGTCTCCCACGAGATGCTTTGCAAGCATACAACAAAGGATTAGACATCGATCCTAACCATGTTCCCAGCATGATATCAACTGCCCGTCTTCTCCAACAACTGGGCGGCAGGCAGTCATTTCCTGTGGTAAGAAGCTTGCTAACCGACGCCCTTCGACTTGATCGAGAAAACCCATCTGCATGGTACAATCTCGGGTTGCTATACAAAGCTGATGTCGGGGCATCCGTGCTGGAGGCTGCCGAATGTTTTGAGGCTGCAACTCTGCTTGAAGAGTCAGCTCCAGTTGAACCTTTCAGATGA 2199 42.43 MRAKAWRNEQILRLKSKFSKMINCIRSGDQLKVDEMMHSSDSLATRDYSASGFSSRTGEVEPKVDNANIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIVAVISRIKASISTRYEQNRRQSQSDVVPTMSMHAISLLLEAIFLKAKSLQGLGRFVEAAKACKLLLDTVESALPEGLPENFASDCKLQGTLTKAVELLPELWKSAGSPEESILSYRRALIYQWNLEMETRAKIEKEFAIFLLYSGCDASPPNLRLQMESSFVPRNNMEEAILLLMDLLGKYIHGLVVWDPSITEHLSFALSIVGEFGALANEVEQLPPGTIGRKEKYWTLALCYYGEGKSLVALNLLKNFLNNKDNVDCLLELLLASKLCGENLVCLDEGVTYILRVLSELGGRCIQMVSIANCLHGVLLSAISKSIASDSLKTLKQSEALKALQTAEQLMKQRDPFIVYHLCLEYAEQRKLDNALYYAKQLVKLEAGSSVKSYILLARILSSQKRFGDAETVINAALEQTGKWEQGELLRTKAKLQIAQGQLKSSIETYTHLLAIIRVRTKSSGVGKMLSKDVRTSDRSLEIETWNDLANIYTSLSQWRDAEICLSKLQAINPYSASKWYSTGLLYESKGLPRDALQAYNKGLDIDPNHVPSMISTARLLQQLGGRQSFPVVRSLLTDALRLDRENPSAWYNLGLLYKADVGASVLEAAECFEAATLLEESAPVEPFR 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8376873 8380424 - Carg06236-RA Car06g01121 150857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01121 732 SMART tpr_5 586 619 IPR019734 GO:0005515
Car06g01121 732 SMART tpr_5 152 185 IPR019734 GO:0005515
Car06g01121 732 SMART tpr_5 530 563 IPR019734 GO:0005515
Car06g01121 732 SMART tpr_5 620 653 IPR019734 GO:0005515
Car06g01121 732 SMART tpr_5 494 527 IPR019734 GO:0005515
Car06g01121 732 SMART tpr_5 691 726 IPR019734 GO:0005515
Car06g01121 732 Gene3D Tetratricopeptide repeat domain 63 573 IPR011990 GO:0005515
Car06g01121 732 Gene3D Tetratricopeptide repeat domain 574 729 IPR011990 GO:0005515
Car06g01121 732 ProSiteProfiles TPR repeat profile. 620 653 IPR019734 GO:0005515
Car06g01121 732 SUPERFAMILY TPR-like 439 559 IPR011990 GO:0005515
Car06g01121 732 SUPERFAMILY TPR-like 531 702 IPR011990 GO:0005515
Car06g01121 732 Pfam Tetratricopeptide repeat 623 653 IPR019734 GO:0005515
Car06g01121 732 Pfam Tetratricopeptide repeat 468 523 - -
Car06g01121 732 PANTHER PROTEIN NPG1 14 732 IPR043376 -
Car06g01121 732 PANTHER OS10G0471400 PROTEIN 14 732 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01121 Car14g01640 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00118 Car-Chr5:607238 Car06g01121 Car-Chr6:8376873 0 dispersed
Car06g01121 Car-Chr6:8376873 Car09g00635 Car-Chr9:3688738 0 dispersed
Car14g01640 Car-Chr14:13139630 Car06g01121 Car-Chr6:8376873 0 wgd
Car19g00082 Car-Chr19:705867 Car06g01121 Car-Chr6:8376873 0 wgd
Car02g01484 Car-Chr2:9646193 Car06g01121 Car-Chr6:8376873 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01121 K21843 - csv:101206105 1229.16