Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01136 ATGACTGATATTTCACTTCAAATTCTACGATGTTTTCGGACCCCCACCCTACAATCGGTCTCCGTCGCAGAAGCTTCGTCAGAAAATCCAGGGCGACATATTGCGCGAAACTCGATAAAATTGATCCTCAGGAACAGGGCCTGGGAGTTTGCGTTGCTCCCATTGTTCATAAGGGGGCTTGAGTTGAATTTTCCACGGAGATTTTTAGGCGAAATTCTGGTTTTAAATCCAGACCTGATTGAACTTATTCGATTAGCTTTTGTGGGTTGGTCTGGAATGGGGCAACAACAATCGAAAGATGAACTGCTCTACCAGCAAGTAAGCTATGGAAATTCAGAAGGGATTAAAGCCCTTTGCCGTGAGGGTGCAGGCCTTGAGTGGATTGATAAGGAGGCGAAAACCCCTTTAATTGTGGCTTGCATGAGTCCTGAGCTTCATAATGTTGCGAGAACTTTGATAGAACTTGGTGCTAATGTTAATGCGTATCGGCCTGGACGTCATGCTGGTACCCCTTTACATCATGCAGCTAAAAGAGGTCTTGAAAATAATGTCAAATTACTTCTTTCTCATGGAGCAAATCCATTGATCATGAATGATGATTGCCAGAGTCCTCTTGATGTTGCTAGAACAAAAGGTCACATCAATGTTGTTCGTACAATCGAGAGTCATATTTGTTTGTTCTCGGGTTGGTTGCGGGAGTTTCATGGACCAGGATTTTTGGAAGTACTGGCTCCTCAATTGGTCTCAAGGAGAGTTTGGGCTGTTATTTTACCATGTGGAGCAAGAAATCTTGCAAGGCCTTTAAAGCTGGAGCTTGCTATATACCCAACTCTACAGGACGCTCAACCGCGTATTGTTGTTCCACTGTGGAGAGCCAGTTTGGAGGAGACGAAGTCACAGCATTCTGATCCATCAGTTATGATTGTGGATAACGCGGCGAAAACTCGCTTGAAACTCGCATCCGGGAATGAAAATGACAAAGAACAACTTCTGTGGTTTTGCAATGCATGCAAAGGAATTCCTACGGTGATGCACCCTGCATTTATGAATGGTAACCAGGGCTCGGGTGCATCCGCAACTGCACCGCCGGACACAGAAGATGTGGAGCTAGACATGGCCATTAACGCTTCCATACAATCATCTACCCAGGGGAGACCACCCTTTCCTGATCCTAGTCCAAGTTCTAAAGCAAGTGCCTCTAGCAGCCATACAGGTCCAGTTACACCAACAACACATTCGACGAAATTAGGCACGAATGATTCCGAAGTGCACGAAGCTGGCCAGAGCAGCAACTCGAACGAACATCCCGAAATCCAGACTAACACCATCCCGTCAGATTCCGTACCTTCAGCTCCACCGGCAGCAAATGATATTCTGGATGATGGTGCAATTCACTATCCATCGATCGACTCAAGTCCAATTGACTTAAGACTGGGCGAAGGGAAAGAGGAATCGAGTTCTTCATCATGTGTTATATGTTTGGATGCTCCCATTGAAGGAGCCTGCATTCCCTGTGGACATATGGCTGGGTGCATGAATTGTTTGACTGAAATCAAATCCAAGAAATGGGGCTGCCCAGTTTGTCGCGCCAAAATCGACCAGGTCGTCCGATTGTATGCTGTATGA 1626 46.13 MTDISLQILRCFRTPTLQSVSVAEASSENPGRHIARNSIKLILRNRAWEFALLPLFIRGLELNFPRRFLGEILVLNPDLIELIRLAFVGWSGMGQQQSKDELLYQQVSYGNSEGIKALCREGAGLEWIDKEAKTPLIVACMSPELHNVARTLIELGANVNAYRPGRHAGTPLHHAAKRGLENNVKLLLSHGANPLIMNDDCQSPLDVARTKGHINVVRTIESHICLFSGWLREFHGPGFLEVLAPQLVSRRVWAVILPCGARNLARPLKLELAIYPTLQDAQPRIVVPLWRASLEETKSQHSDPSVMIVDNAAKTRLKLASGNENDKEQLLWFCNACKGIPTVMHPAFMNGNQGSGASATAPPDTEDVELDMAINASIQSSTQGRPPFPDPSPSSKASASSSHTGPVTPTTHSTKLGTNDSEVHEAGQSSNSNEHPEIQTNTIPSDSVPSAPPAANDILDDGAIHYPSIDSSPIDLRLGEGKEESSSSSCVICLDAPIEGACIPCGHMAGCMNCLTEIKSKKWGCPVCRAKIDQVVRLYAV 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8443312 8447486 - Carg06221-RA Car06g01136 150872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01136 541 ProSiteProfiles Ankyrin repeat region circular profile. 167 193 - -
Car06g01136 541 Pfam Ankyrin repeats (many copies) 170 218 IPR002110 GO:0005515
Car06g01136 541 ProSiteProfiles Ankyrin repeat profile. 167 199 IPR002110 GO:0005515
Car06g01136 541 ProSiteProfiles Ankyrin repeat region circular profile. 131 161 - -
Car06g01136 541 ProSiteProfiles Ankyrin repeat profile. 131 164 IPR002110 GO:0005515
Car06g01136 541 MobiDBLite consensus disorder prediction 394 449 - -
Car06g01136 541 ProSiteProfiles Zinc finger RING-type profile. 490 529 IPR001841 -
Car06g01136 541 MobiDBLite consensus disorder prediction 380 457 - -
Car06g01136 541 Pfam Zinc finger, C3HC4 type (RING finger) 488 535 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01136 - - - mcha:111018163 766.148
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01136 Car17g00143 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01136 Car-Chr6:8443312 Car20g00595 Car-Chr20:3339235 5.91E-12 dispersed
Car14g01627 Car-Chr14:13070935 Car06g01136 Car-Chr6:8443312 0 wgd
Car17g00143 Car-Chr17:887009 Car06g01136 Car-Chr6:8443312 2.06E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g717 . . . . . Bpe14g01258 . . . Cmo17g00160 Cma06g01318 Cma14g01815 Car06g01136 . . . . . . . . . . . Cla06g00667 Cam06g0716 . Cco06g0731 Clacu06g0707 Cmu06g0694 Cre06g1464 . . . . Lsi05g01735 Csa02g01059 Chy05g00319 Cme06g00486 . Blo07g00266 Bda11g00635 Bda13g00059 . . Bma02g00778 . . Cmo06g01328 Cmo14g01854 . Cma17g00162 . Car17g00143 . . Bhi12g01615 . . . . . Lcy13g0378 Cla05g00442 Cam05g0480 Cec05g0490 Cco05g0490 Clacu05g0476 Cmu05g0455 Cre05g0517 Lsi09g01232 Csa03g01204 Chy06g00467 Cme05g00571
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002162 2 4 2 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 1 2 2 2 2 2 2 2 2 3 2 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car06g01136 Car_Chr06 FPKM 24.102655 25.219229 48.813187 49.359711 19.885298 21.32785 20.907352 78.075432 80.489182 81.484253